Orpowell / alphafold-analyserLinks
A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.
☆14Updated last month
Alternatives and similar repositories for alphafold-analyser
Users that are interested in alphafold-analyser are comparing it to the libraries listed below
Sorting:
- A package for making tree-based visualizations for embedding vectors☆10Updated 2 years ago
- Evolutionary conservation estimation of residues or nucleotides☆54Updated 3 years ago
- ☆13Updated last year
- Code for LazyAF pipeline☆21Updated last year
- Fast protein domain structure embedding+search tool☆27Updated 2 months ago
- Decoding the functional networks of non-model organisms☆11Updated last week
- Virus Protein Structural Analysis Toolkit☆14Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆32Updated 2 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Updated 6 years ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- a collection of colabs useful for molecular biology☆31Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆37Updated 2 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated this week
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated this week
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated 2 years ago
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆22Updated 7 months ago
- Comprehensive Python client for the Uniprot REST API☆53Updated 2 months ago
- HLA-I ligand predictor☆43Updated 2 months ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆49Updated 3 weeks ago
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated 2 weeks ago
- DeepECtransformer☆29Updated 2 years ago
- ☆21Updated 2 months ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated 2 years ago
- Vector graphics cartoons from protein structure☆56Updated 3 years ago
- Generated color schemes for sequence alignment visualizations☆18Updated 3 years ago