Orpowell / alphafold-analyserLinks
A command line tool for rapid visualisation of AlphaFold2 and AlphaFold3 predictions.
☆14Updated 3 months ago
Alternatives and similar repositories for alphafold-analyser
Users that are interested in alphafold-analyser are comparing it to the libraries listed below
Sorting:
- Evolutionary conservation estimation of residues or nucleotides☆57Updated 3 years ago
- Code for LazyAF pipeline☆22Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated 2 weeks ago
- Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment.☆18Updated last year
- The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.☆20Updated last year
- Fast protein domain structure embedding+search tool☆27Updated 4 months ago
- Python package and command line tool for epitope prediction☆52Updated last year
- A package for making tree-based visualizations for embedding vectors☆10Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆79Updated 2 months ago
- ☆13Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆19Updated 6 years ago
- ☆21Updated 3 months ago
- Comprehensive Python client for the Uniprot REST API☆55Updated 3 months ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 2 years ago
- Python Implementation of Codon Adaption Index☆37Updated 3 years ago
- Python framework for doing ancestral sequence reconstruction☆43Updated last year
- HLA-I ligand predictor☆43Updated 4 months ago
- RNA Structural Covariation Above Phylogenetic Expectation☆18Updated last month
- Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…☆23Updated 8 months ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆33Updated last month
- Automatic oligonucleotide design for PCR-based gene synthesis☆51Updated 2 months ago
- Vector graphics cartoons from protein structure☆57Updated 3 years ago
- A Python package for mapping sequence aligned data onto protein structures☆37Updated 4 years ago
- Convert PDB residues to their Uniprot equivalents☆17Updated 5 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 3 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆39Updated 4 months ago
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 3 years ago