Alternatives and similar repositories for Bio-Jobs

Users that are interested in Bio-Jobs are comparing it to the libraries listed below

• KrishnaswamyLab / SingleCellWorkshop
  ☆96Updated 4 years ago
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆135Updated 2 years ago
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆144Updated 2 years ago
• Durenlab / LINGER
  ☆119Updated 5 months ago
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆94Updated 3 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆107Updated last month
• calico / scBasset
  Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.
  ☆98Updated 2 months ago
• Winnie09 / GPTCelltype
  ☆214Updated last year
• ZJUFanLab / bulk2space
  a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …
  ☆126Updated 2 years ago
• digitalcytometry / ecotyper
  EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
  ☆220Updated last year
• Teichlab / SpatialDE
  Test genes for Spatial Variation
  ☆176Updated last year
• jfnavarro / st_pipeline
  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …
  ☆88Updated 8 months ago
• singleron-RD / CeleScope
  Single Cell Analysis Pipelines
  ☆111Updated this week
• gao-lab / Cell_BLAST
  A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
  ☆94Updated last year
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆148Updated 11 months ago
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆63Updated 2 weeks ago
• OpenGene / scrnapip
  A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis
  ☆112Updated 2 years ago
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆97Updated 3 weeks ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆153Updated last year
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆150Updated 3 years ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆46Updated 4 years ago
• dviraran / xCell
  Cell types enrichment analysis
  ☆204Updated last year
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆87Updated 2 months ago
• ZJUFanLab / scDeepSort
  Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
  ☆106Updated 2 years ago
• rajewsky-lab / openst
  Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
  ☆106Updated 4 months ago
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆99Updated 2 years ago
• jasonHKU0907 / proteome-phenome-atlas
  ☆70Updated 8 months ago
• scverse / decoupler
  Python package to perform enrichment analysis from omics data.
  ☆238Updated this week
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆107Updated last year