A deep generative neural network based approach to impute drug response
☆21May 30, 2021Updated 4 years ago
Alternatives and similar repositories for VAEN
Users that are interested in VAEN are comparing it to the libraries listed below
Sorting:
- GraphCDR: A graph neural network method with contrastive learning for cancer drug response prediction☆31Sep 27, 2021Updated 4 years ago
- R package for epigraphdb☆28Jul 6, 2024Updated last year
- ☆15Mar 15, 2023Updated 2 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Updated this week
- ☆12Apr 16, 2021Updated 4 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 2 months ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- ☆29May 22, 2020Updated 5 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 3 years ago
- ☆17Mar 11, 2024Updated last year
- DeepTTC: a transformer-based model for predicting cancer drug response☆19Jun 1, 2023Updated 2 years ago
- QBRC Somatic Mutation Calling Pipeline☆16Feb 8, 2022Updated 4 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆24May 10, 2025Updated 9 months ago
- ☆17Feb 13, 2023Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆17Jan 17, 2024Updated 2 years ago
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated 10 months ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Nov 16, 2020Updated 5 years ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- ☆21Dec 23, 2024Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- ☆11Jul 3, 2022Updated 3 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆54Feb 11, 2026Updated 2 weeks ago
- Kinase–drug binding prediction with calibrated uncertainty quantification☆23Jan 23, 2024Updated 2 years ago
- ☆25Aug 24, 2023Updated 2 years ago
- ☆25Dec 6, 2025Updated 2 months ago
- Distribution of TEs and their relationship to genes in host genome☆24Jun 20, 2023Updated 2 years ago
- A guide for analyzing single-cell RNA-seq data using the R package Seurat. Go from raw data to cell clustering, identifying cell types, c…☆29Feb 19, 2020Updated 6 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 2 years ago
- An interpretable simulator that generates realistic single-cell gene expression count data with gene correlations recapitulated☆27Nov 2, 2024Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated last year
- Robust Integration of Single-Cell Cytometry Datasets☆32Aug 29, 2025Updated 6 months ago
- Spatial direct messaging detected by bivariate Moran☆32Jul 16, 2025Updated 7 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Aug 8, 2023Updated 2 years ago