bsml320 / VAENLinks
A deep generative neural network based approach to impute drug response
☆21Updated 4 years ago
Alternatives and similar repositories for VAEN
Users that are interested in VAEN are comparing it to the libraries listed below
Sorting:
- DeepTTC: a transformer-based model for predicting cancer drug response☆16Updated 2 years ago
- ☆30Updated 5 months ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆66Updated 2 years ago
- Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…☆20Updated 3 years ago
- Synthetic lethality (SL) is a promising gold mine for the discovery of anti-cancer drug targets. KG4SL is the first graph neural network …☆33Updated last year
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 4 years ago
- ☆45Updated 3 years ago
- Contextual AI models for single-cell protein biology☆86Updated 4 months ago
- ☆17Updated 9 months ago
- Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning☆20Updated 3 months ago
- ☆35Updated 2 years ago
- ☆11Updated last year
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆52Updated 6 months ago
- A VGAE-based model to infer transcription factor regulatory network☆27Updated 2 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆51Updated last year
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆15Updated 4 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- ☆17Updated 2 years ago
- Explainable Multilayer Graph Neural Network for Cancer Gene Prediction☆16Updated last year
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆70Updated 3 months ago
- A repository for neural representational learning of RNA secondary structures☆32Updated 5 years ago
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆17Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- ☆20Updated 8 months ago
- Supplementary code for the paper: Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19☆27Updated 4 years ago
- ☆9Updated last year
- ☆49Updated last year
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆15Updated 2 years ago
- L1000 peak deconvolution based on Bayesian analysis☆25Updated 3 years ago
- ☆57Updated 5 years ago