Alternatives and similar repositories for multiomics-open-research

Users that are interested in multiomics-open-research are comparing it to the libraries listed below

• const-ae / linear_perturbation_prediction-Paper
  ☆69Updated 6 months ago
• RasmussenLab / MOVE
  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
  ☆90Updated last year
• microsoft / zero-shot-scfoundation
  ☆77Updated last week
• BoevaLab / CancerFoundation
  CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer
  ☆29Updated 4 months ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆52Updated 5 months ago
• bowang-lab / genomic-FM
  ☆32Updated last week
• jkobject / geneformer
  ☆90Updated 5 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆144Updated last month
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆77Updated 10 months ago
• itmoon7 / onconpc
  Clinical sequencing-based primary site classifier
  ☆38Updated last year
• poseidonchan / TAPE
  Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
  ☆58Updated last year
• suinleelab / contrastiveVI
  ☆60Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆101Updated last year
• mlbio-epfl / systema
  ☆49Updated this week
• lanagarmire / DeepProg
  Deep-Learning framework for multi-omic and survival data integration
  ☆85Updated 2 years ago
• siyuh / Squidiff
  ☆104Updated 2 months ago
• TencentAILabHealthcare / scPROTEIN
  ☆56Updated last year
• marakeby / pnet_prostate_paper
  P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
  ☆165Updated 4 years ago
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆58Updated 8 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆33Updated 5 months ago
• UCSC-VLAA / EpiFoundation
  Pytorch implementation of EpiFoundation
  ☆25Updated 10 months ago
• HakimBenkirane / CustOmics
  A deep-learning framework for multi-omics integration
  ☆31Updated 2 years ago
• bowang-lab / scGPT-spatial
  ☆124Updated 11 months ago
• zou-group / CellVoyager
  ☆100Updated 4 months ago
• theislab / ssl_in_scg
  ☆15Updated last year
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆23Updated last year
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆82Updated 10 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• aristoteleo / awesome-bioagent-papers
  Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.
  ☆84Updated 3 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆88Updated 3 years ago