Alternatives and similar repositories for multiomics-open-research:

Users that are interested in multiomics-open-research are comparing it to the libraries listed below

• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 3 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆36Updated 2 years ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆62Updated last month
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆21Updated 5 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆54Updated 9 months ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆54Updated 2 years ago
• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆50Updated last month
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆20Updated last month
• suinleelab / deepprofile-study
  Code for paper "A deep profile of gene expression across 18 human cancers"
  ☆21Updated 4 months ago
• suinleelab / contrastiveVI
  ☆54Updated last year
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆33Updated 5 years ago
• rahuldhodapkar / cell2sentence
  Create cell sentences from sequencing data
  ☆22Updated 8 months ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆57Updated 10 months ago
• xiongxslab / Translatomer
  ☆18Updated 2 months ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆43Updated last year
• TencentAILabHealthcare / scTranslator
  ☆36Updated 8 months ago
• yjgeno / GenKI
  ☆14Updated last year
• lanagarmire / Asgard
  ☆42Updated last year
• romain-lopez / DestVI-reproducibility
  Reproducing the experiments of the DestVI paper
  ☆18Updated 3 years ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆32Updated last week
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆64Updated 2 years ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆80Updated 2 years ago
• bowang-lab / genomic-FM
  ☆23Updated last week
• gevaertlab / sequoia-pub
  SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
  ☆38Updated last month
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆43Updated 8 months ago
• theislab / scTab
  ☆58Updated 7 months ago
• Lifoof / MoGCN
  Multi-omics integration method using AE and GCN
  ☆34Updated last year
• lanagarmire / DeepProg
  Deep-Learning framework for multi-omic and survival data integration
  ☆82Updated last year
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆120Updated 2 months ago
• jishnu-lab / SLIDE
  ☆26Updated last week