PEtab-dev / petab_selectLinks
Model selection for PEtab
☆13Updated 2 weeks ago
Alternatives and similar repositories for petab_select
Users that are interested in petab_select are comparing it to the libraries listed below
Sorting:
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated 2 weeks ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆28Updated 3 weeks ago
- Python package for working with PEtab files☆16Updated 2 weeks ago
- High-performance sensitivity analysis for large ordinary differential equation models☆128Updated last week
- Docker images for Chaste☆12Updated last week
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated 2 weeks ago
- Trust Region Optimization in Python☆28Updated last month
- python Parameter EStimation TOolbox☆265Updated last week
- Python interface to C++ sampling library HOPS☆15Updated 3 weeks ago
- Lightweight solver for liquid chromatography models based on a DGSEM spatial discretization. This reduced Julia adaption of CADET-Core (C…☆27Updated this week
- Modeling toolkit for biochemical simulation☆81Updated 11 months ago
- Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute re…☆46Updated 3 weeks ago
- A Universal Modeling Language for Metabolic Flux Analysis☆13Updated 9 months ago
- Learning materials for scientific software development☆92Updated 2 weeks ago
- distributed, likelihood-free inference☆216Updated this week
- Python utilities for SBML☆41Updated last month
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations☆47Updated 2 weeks ago
- Python wrapper of LSODA (solving ODEs) which can be called from within numba functions.☆103Updated 2 years ago
- Just-in-Time Compilation for Ordinary Differential Equations☆68Updated 5 months ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Updated 2 years ago
- Numerical quadrature with JAX☆73Updated last week
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 5 years ago
- File based Python interface☆19Updated 5 months ago
- A Julia package to construct orthogonal polynomials, their quadrature rules, and use it with polynomial chaos expansions.☆124Updated last month
- Definition of the HEP statistics serialization standard (HS3)☆13Updated last month
- A Framework for Modelling and Optimizing Advanced Chromatographic Processes☆31Updated last week
- Constraint-Based Reconstruction and EXascale Analysis☆45Updated last year
- Implementations of single and multi-ellipsoid nested sampling☆48Updated last month
- ☆57Updated 7 months ago