PEtab-dev / petab_selectLinks
Model selection for PEtab
☆12Updated 4 months ago
Alternatives and similar repositories for petab_select
Users that are interested in petab_select are comparing it to the libraries listed below
Sorting:
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated this week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated last week
- High-performance sensitivity analysis for large ordinary differential equation models☆122Updated last week
- Python package for working with PEtab files☆14Updated this week
- Trust Region Optimization in Python☆27Updated 2 years ago
- Julia implementation of the Discontinuous Galerkin Spectral Element method (DGSEM) from CADET-Core.☆27Updated last week
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated 4 months ago
- python Parameter EStimation TOolbox☆248Updated this week
- Python interface to C++ sampling library HOPS☆14Updated last week
- distributed, likelihood-free inference☆216Updated 3 weeks ago
- Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute re…☆45Updated last week
- Learning materials for scientific software development☆88Updated 2 weeks ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 4 months ago
- Modeling toolkit for biochemical simulation☆75Updated 5 months ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- A Framework for Modelling and Optimizing Advanced Chromatographic Processes☆28Updated this week
- File based Python interface☆19Updated 2 weeks ago
- Numerical quadrature with JAX☆66Updated last week
- Python utilities for SBML☆41Updated last month
- Python wrapper of LSODA (solving ODEs) which can be called from within numba functions.☆98Updated 2 years ago
- Python wrapper around cvodes (from the sundials library)☆34Updated this week
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 5 years ago
- Solve ODEs fast, with support for PyMC☆114Updated last year
- Numerical derivatives for Python☆45Updated last week
- Public version of PolyChord: See polychord.co.uk for PolyChordPro☆93Updated 3 weeks ago
- UM-Bridge (the UQ and Model Bridge) provides a unified interface for numerical models that is accessible from virtually any programming l…☆39Updated last month
- Bayesian analysis toolkit http://mpp.mpg.de/bat☆69Updated 4 years ago
- N-body integrator computes derivatives with respect to initial conditions for TTVs, RV, Photodynamics & more☆26Updated 2 months ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 10 months ago
- Just-in-Time Compilation for Ordinary Differential Equations☆66Updated 5 months ago