PEtab-dev / petab_selectLinks
Model selection for PEtab
☆13Updated last month
Alternatives and similar repositories for petab_select
Users that are interested in petab_select are comparing it to the libraries listed below
Sorting:
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆30Updated 2 weeks ago
- Python package for working with PEtab files☆16Updated last week
- High-performance sensitivity analysis for large ordinary differential equation models☆130Updated this week
- Trust Region Optimization in Python☆28Updated 2 months ago
- Python interface to C++ sampling library HOPS☆15Updated last month
- python Parameter EStimation TOolbox☆266Updated this week
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated last month
- Lightweight solver for liquid chromatography models based on a DGSEM spatial discretization. This reduced Julia adaption of CADET-Core (C…☆27Updated this week
- Docker images for Chaste☆12Updated last week
- Modeling toolkit for biochemical simulation☆82Updated last year
- Python utilities for SBML☆41Updated 2 weeks ago
- A Universal Modeling Language for Metabolic Flux Analysis☆13Updated 11 months ago
- distributed, likelihood-free inference☆216Updated last month
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆27Updated 5 years ago
- Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute re…☆46Updated this week
- Multilevel Delayed Acceptance MCMC sampler with finite-length subchains, modern transition kernels and adaptive error modelling.☆16Updated 4 months ago
- Learning materials for scientific software development☆93Updated last month
- Python wrapper of LSODA (solving ODEs) which can be called from within numba functions.☆103Updated 2 years ago
- A Framework for Modelling and Optimizing Advanced Chromatographic Processes☆31Updated last week
- libRoadRunner: A high-performance SBML simulator☆55Updated 3 weeks ago
- File based Python interface☆19Updated last week
- Just-in-Time Compilation for Ordinary Differential Equations☆68Updated 6 months ago
- A simplified python interface to COPASI.☆25Updated 3 weeks ago
- Numerical quadrature with JAX☆75Updated 2 weeks ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- python based implementation of the nested sampling algorithm☆27Updated 11 years ago
- Numerical derivatives for Python☆51Updated last week
- Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations☆47Updated last month