PEtab-dev / petab_selectLinks
Model selection for PEtab
☆12Updated 2 weeks ago
Alternatives and similar repositories for petab_select
Users that are interested in petab_select are comparing it to the libraries listed below
Sorting:
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated this week
- High-performance sensitivity analysis for large ordinary differential equation models☆125Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated 2 weeks ago
- Python package for working with PEtab files☆15Updated this week
- Trust Region Optimization in Python☆28Updated 2 years ago
- Python interface to C++ sampling library HOPS☆14Updated this week
- Julia implementation of the Discontinuous Galerkin Spectral Element method (DGSEM) from CADET-Core.☆27Updated last week
- python Parameter EStimation TOolbox☆254Updated this week
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆22Updated 6 months ago
- A Universal Modeling Language for Metabolic Flux Analysis☆12Updated 5 months ago
- Modeling toolkit for biochemical simulation☆76Updated 7 months ago
- Python utilities for SBML☆41Updated 2 months ago
- distributed, likelihood-free inference☆216Updated 2 months ago
- Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute re…☆46Updated 3 weeks ago
- A Framework for Modelling and Optimizing Advanced Chromatographic Processes☆29Updated this week
- Just-in-Time Compilation for Ordinary Differential Equations☆67Updated last month
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Learning materials for scientific software development☆88Updated last month
- UM-Bridge (the UQ and Model Bridge) provides a unified interface for numerical models that is accessible from virtually any programming l…☆39Updated 2 months ago
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆62Updated 2 years ago
- A MATLAB toolbox for analysing structural properties of nonlinear models (identifiability, observability, accessibility, controllability)☆29Updated 3 months ago
- Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations☆45Updated last week
- Solving differential equations in Python using DifferentialEquations.jl and the SciML Scientific Machine Learning organization☆574Updated 7 months ago
- Native Julia I/O package to work with CERN ROOT files objects (TTree and RNTuple)☆110Updated this week
- Python wrapper of LSODA (solving ODEs) which can be called from within numba functions.☆98Updated 2 years ago
- File based Python interface☆19Updated last month
- Python package for computing indirect detection constraints on sub-GeV dark matter.☆13Updated 6 months ago
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 5 years ago
- SIAN (Structural Identifiability ANalyser) is a software for assessing structural identifiability of ODE models.☆21Updated 2 years ago
- A Julia package to construct orthogonal polynomials, their quadrature rules, and use it with polynomial chaos expansions.☆123Updated last week