OpenOmics / genome-seekLinks
Clinical Whole Genome and Exome Sequencing Pipeline
☆26Updated 2 months ago
Alternatives and similar repositories for genome-seek
Users that are interested in genome-seek are comparing it to the libraries listed below
Sorting:
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆50Updated this week
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆53Updated 4 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- a set of NGS pipelines☆24Updated this week
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Generic human DNA variant annotation pipeline☆58Updated last year
- A Nextflow Genome-Wide Association Study (GWAS) Pipeline☆35Updated 2 months ago
- ☆33Updated 3 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 3 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 6 months ago
- ☆29Updated 5 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- List of IARC bioinformatics pipelines and resources☆53Updated 2 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools☆53Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated 2 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 5 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆74Updated 6 months ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆16Updated 2 years ago
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago