An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.
☆21Mar 19, 2026Updated this week
Alternatives and similar repositories for useq-schema
Users that are interested in useq-schema are comparing it to the libraries listed below
Sorting:
- A set of Qt-based widgets onto the pymmcore-plus model☆20Updated this week
- Pure python/C++ micro-manager ecosystem☆46Mar 13, 2026Updated last week
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆75Mar 2, 2026Updated 2 weeks ago
- Python bindings for MMCore, Micro-Manager's device control layer☆35Mar 10, 2026Updated last week
- Place to discuss the future design of a universal microscope hardware interface☆15May 18, 2021Updated 4 years ago
- ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of mu…☆84Mar 10, 2026Updated last week
- An R package to detect collective spatio-temporal phenomena☆13Sep 25, 2025Updated 5 months ago
- General-purpouse camera capture plugin for data streaming to napari☆26Mar 18, 2024Updated 2 years ago
- Pure Python Micro-Manager GUI Application, built on pymmcore-plus☆19Updated this week
- Python control of micro-manager for customized data acquisition☆179Mar 13, 2026Updated last week
- This is the repository for the openSIM project which integrates structured illumination microscopy into the UC2-system.☆12May 25, 2022Updated 3 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 6 months ago
- Development of PICASSO plugin for napari☆16Jan 17, 2023Updated 3 years ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Electronic control of microscope elements (camera/laser triggering, TTL, PWM, servos, analog i/o) based on affordable FPGAs, integrated w…☆22Feb 27, 2023Updated 3 years ago
- Napari gaming☆17Dec 22, 2021Updated 4 years ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Jun 21, 2024Updated last year
- Use your microscope for microfabrication☆22Feb 23, 2025Updated last year
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆89Mar 10, 2026Updated last week
- ☆37Mar 22, 2024Updated 2 years ago
- Noise Correction Algorithm for sCMOS cameras☆28Jan 15, 2020Updated 6 years ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆76Mar 2, 2026Updated 2 weeks ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆155Updated this week
- Streaming directly to Zarr on the file system or S3☆29Updated this week
- Deconvolution of widefield microscopy images and generation of point spread functions☆59Jan 8, 2026Updated 2 months ago
- This is the course material for the introductory course into Python basics for Data Scientists.☆12Mar 14, 2023Updated 3 years ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- Dockerfile to build a working CellProfiler (http://cellprofiler.org/) image☆11Jun 2, 2022Updated 3 years ago
- Generate multifunctional and macro recordable GUIs from Python classes☆45Mar 5, 2026Updated 2 weeks ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- Multiscale Image Restoration for fluorescence microscopy☆10Jun 17, 2023Updated 2 years ago
- 1d plotting in napari-based canvas.☆25Updated this week
- SIMcheck: ImageJ tools for assessing Structured Illumination Microscopy (SIM) data quality and reliability☆29Jan 27, 2021Updated 5 years ago
- Software for camera acquisition and tracking of particles☆11Nov 22, 2022Updated 3 years ago
- Course on Deep Learning for imaging using PyTorch☆13Feb 2, 2022Updated 4 years ago
- Segment images utilizing pre-trained neural networks as feature extractors☆48Feb 25, 2026Updated 3 weeks ago
- A python script editor plugin for napari☆11Jul 8, 2023Updated 2 years ago
- Micro-Manager's device control layer, written in C++☆59Updated this week
- Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and pe…☆68Feb 14, 2026Updated last month