An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.
☆23Oct 26, 2026Updated this week
Alternatives and similar repositories for useq-schema
Users that are interested in useq-schema are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A set of Qt-based widgets onto the pymmcore-plus model☆23Oct 19, 2026Updated last week
- Pure python/C++ micro-manager ecosystem☆56Updated this week
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆81Oct 5, 2026Updated 3 weeks ago
- Python bindings for MMCore, Micro-Manager's device control layer☆36Oct 14, 2026Updated 2 weeks ago
- General-purpouse camera capture plugin for data streaming to napari☆26Mar 18, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Pure Python Micro-Manager GUI Application, built on pymmcore-plus☆22Aug 18, 2026Updated 2 months ago
- Real-time feedback control microscopy for automation of optogenetic targeting☆19Oct 19, 2026Updated last week
- A list of awesome bioimage analysis challenges☆10Feb 1, 2022Updated 4 years ago
- Unified API for streaming camera frames to either OME-TIFF or OME-Zarr format☆13Sep 18, 2026Updated last month
- Place to discuss the future design of a universal microscope hardware interface☆18May 18, 2021Updated 5 years ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆81Updated this week
- ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of mu…☆88Jul 10, 2026Updated 3 months ago
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Deploy image processing algorithms in FastAPI servers and easily run them in Napari, QuPath, and more.☆11Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python control of micro-manager for customized data acquisition☆190Jun 17, 2026Updated 4 months ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Jun 21, 2024Updated 2 years ago
- Multiscale Image Restoration for fluorescence microscopy☆10Jun 17, 2023Updated 3 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆25Oct 5, 2026Updated 3 weeks ago
- Cellular Agent-based Modeling from a Clean Slate☆23Oct 8, 2026Updated 3 weeks ago
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆59May 20, 2024Updated 2 years ago
- An R package to detect collective spatio-temporal phenomena☆13Sep 25, 2025Updated last year
- ImageJ plugin for the fast generation of microscopy PSF☆11Oct 28, 2025Updated last year
- An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)☆13Oct 14, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆41Oct 14, 2026Updated 2 weeks ago
- This is the repository for the openSIM project which integrates structured illumination microscopy into the UC2-system.☆12May 25, 2022Updated 4 years ago
- Development of PICASSO plugin for napari☆16Jan 17, 2023Updated 3 years ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆98Oct 6, 2026Updated 3 weeks ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆19Oct 20, 2026Updated last week
- 2D and 3D image deconvolution with python☆15Sep 20, 2024Updated 2 years ago
- Conversion between spatial transformations of various formats / parametrizations☆10May 15, 2026Updated 5 months ago
- A napari plugin for zarr backed OME-NGFF images☆56Oct 19, 2026Updated last week
- simple standalone BigDataViewer for multiple N5 (or HDF5) datasets☆12Mar 6, 2026Updated 7 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Segment images utilizing pre-trained neural networks as feature extractors☆56Oct 21, 2026Updated last week
- GUI for analysis and visualization of deformability cytometry datasets☆10Sep 30, 2026Updated last month
- Napari gaming☆17Dec 22, 2021Updated 4 years ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Oct 14, 2026Updated 2 weeks ago
- litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexibl…☆19Apr 5, 2026Updated 6 months ago
- Electronic control of microscope elements (camera/laser triggering, TTL, PWM, servos, analog i/o) based on affordable FPGAs, integrated w…☆26Feb 27, 2023Updated 3 years ago
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆178Updated this week