tlambert03 / nd2
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
☆58Updated 2 weeks ago
Alternatives and similar repositories for nd2:
Users that are interested in nd2 are comparing it to the libraries listed below
- ☆47Updated 5 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆80Updated this week
- native Python dataclasses for the OME data model☆55Updated 2 weeks ago
- A napari plugin for clustering objects according to their properties.☆82Updated last week
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Python libraries for loading, running and packaging bioimage.io models☆30Updated this week
- StarDist plugin for napari☆37Updated 6 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated this week
- Browse your OMERO database from within napari.☆36Updated this week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 5 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆72Updated 3 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 4 months ago
- 1d plotting in napari-based canvas.☆26Updated this week
- Pure python/C++ micro-manager ecosystem☆35Updated this week
- A napari plugin for zarr backed OME-NGFF images☆32Updated this week
- Lectures for a napari training course☆50Updated last year
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆17Updated last week
- ☆23Updated 6 months ago
- Particle tracking by solving linear assignment problem.☆49Updated 3 weeks ago
- Command-line client for Fractal☆45Updated this week
- ☆68Updated this week
- Multiple file format reading directly into napari using pure Python☆35Updated 8 months ago
- Python bindings for MMCore, Micro-Manager's device control layer☆34Updated this week
- Automated mitochondrial segmentation and tracking.☆31Updated 3 years ago
- Cookiecutter for napari plugins☆69Updated 4 months ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆67Updated this week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Interactive visualization and sharing of cell tracking data in the browser☆23Updated this week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆25Updated 9 months ago
- Accurate and efficient spot detection for microscopy data☆72Updated 2 weeks ago