Alternatives and similar repositories for nd2

Users that are interested in nd2 are comparing it to the libraries listed below

• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆110Updated 2 weeks ago
• haesleinhuepf / devbio-napari
  ☆51Updated 8 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated 2 weeks ago
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆78Updated last year
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated last month
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated 2 months ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 3 months ago
• rosalindfranklininstitute / RedLionfish
  ☆36Updated last year
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆99Updated 2 weeks ago
• tlambert03 / microsim
  ☆42Updated 3 weeks ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆55Updated 8 months ago
• peng-lab / BaSiCPy
  ☆91Updated 2 months ago
• AnniekStok / napari-segmentation-toolbox
  A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.
  ☆11Updated 3 weeks ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆174Updated 7 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆61Updated last year
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆113Updated last month
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated 2 years ago
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆220Updated last month
• ome / napari-omero
  Browse your OMERO database from within napari.
  ☆40Updated last month
• BioVisionCenter / ngio
  Ngio is a Python library to streamline OME-Zarr image analysis workflows.
  ☆37Updated 3 weeks ago
• GuignardLab / tapenade
  ☆13Updated last month
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆65Updated 3 weeks ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆20Updated 2 years ago
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆61Updated last month
• lukasz-migas / napari-plot
  1d plotting in napari-based canvas.
  ☆25Updated last week
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆47Updated last week
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆89Updated last month
• fideus-labs / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆55Updated this week
• napari / napari-animation
  A napari plugin for making animations
  ☆89Updated this week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year