tlambert03 / nd2Links
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
☆65Updated 3 weeks ago
Alternatives and similar repositories for nd2
Users that are interested in nd2 are comparing it to the libraries listed below
Sorting:
- ☆50Updated last month
- Image reading, metadata management, and image writing for Microscopy images in Python☆88Updated this week
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 7 months ago
- native Python dataclasses for the OME data model☆56Updated 3 weeks ago
- ☆23Updated last month
- Multiple file format reading directly into napari using pure Python☆36Updated 11 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 2 months ago
- ☆81Updated 3 months ago
- Pure python/C++ micro-manager ecosystem☆37Updated last week
- Browse your OMERO database from within napari.☆37Updated 2 weeks ago
- StarDist plugin for napari☆38Updated 10 months ago
- Command-line client for Fractal☆46Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆31Updated 3 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated last month
- Creating figures and animations for multi-channel images with a focus on microscopy.☆77Updated 6 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 8 months ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆80Updated 2 weeks ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆69Updated 3 weeks ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆74Updated this week
- Cell tracking and segmentation software☆117Updated this week
- ☆38Updated 3 weeks ago
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated 2 weeks ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated last month
- A napari plugin for zarr backed OME-NGFF images☆33Updated 3 weeks ago
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆19Updated last week
- Use ImageJ functionality from napari☆31Updated 2 months ago
- ☆12Updated last year