Alternatives and similar repositories for nd2

Users that are interested in nd2 are comparing it to the libraries listed below

• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆94Updated last month
• haesleinhuepf / devbio-napari
  ☆51Updated 3 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated last week
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆37Updated last year
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated this week
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 9 months ago
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆78Updated 7 months ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆92Updated this week
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆46Updated last week
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆51Updated 3 months ago
• peng-lab / BaSiCPy
  ☆85Updated 4 months ago
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆38Updated this week
• guiwitz / napari-serialcellpose
  ☆15Updated 2 weeks ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆165Updated 2 months ago
• rosalindfranklininstitute / RedLionfish
  ☆31Updated last year
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆57Updated last week
• tlambert03 / microsim
  ☆39Updated 3 weeks ago
• bioimage-io / core-bioimage-io-python
  Python libraries for loading, running and packaging bioimage.io models
  ☆33Updated 2 weeks ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆55Updated 9 months ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆58Updated 3 weeks ago
• maweigert / spotipy
  ☆12Updated last year
• pymmcore-plus / napari-micromanager
  GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets
  ☆70Updated 3 weeks ago
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆76Updated 3 weeks ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆40Updated 11 months ago
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆80Updated 3 weeks ago
• pymmcore-plus / pymmcore-plus
  Pure python/C++ micro-manager ecosystem
  ☆41Updated this week
• lukasz-migas / napari-plot
  1d plotting in napari-based canvas.
  ☆26Updated this week
• AnniekStok / napari-segmentation-correction
  A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.
  ☆10Updated 3 weeks ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆18Updated 3 months ago