tlambert03 / nd2Links
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
☆66Updated 3 weeks ago
Alternatives and similar repositories for nd2
Users that are interested in nd2 are comparing it to the libraries listed below
Sorting:
- Image reading, metadata management, and image writing for Microscopy images in Python☆98Updated this week
- ☆51Updated 3 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Creating figures and animations for multi-channel images with a focus on microscopy.☆78Updated 8 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year
- ☆32Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 10 months ago
- 1d plotting in napari-based canvas.☆26Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆51Updated 3 months ago
- Particle tracking by solving linear assignment problem.☆57Updated this week
- Browse your OMERO database from within napari.☆38Updated 3 weeks ago
- ☆39Updated 2 weeks ago
- Python libraries for loading, running and packaging bioimage.io models☆33Updated 2 weeks ago
- Accurate and efficient spot detection for microscopy data☆95Updated 2 weeks ago
- native Python dataclasses for the OME data model☆60Updated 2 weeks ago
- ☆87Updated 5 months ago
- ☆15Updated last month
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆10Updated last week
- StarDist plugin for napari☆40Updated last year
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆70Updated 3 weeks ago
- Lectures for a napari training course☆50Updated last year
- A napari plugin for zarr backed OME-NGFF images☆33Updated 2 weeks ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆49Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last week
- A napari plugin for making animations☆87Updated last month
- ☆12Updated last year
- Command-line client for Fractal☆46Updated last week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆78Updated 2 weeks ago
- ☆12Updated last month