tlambert03 / nd2Links
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
☆65Updated last month
Alternatives and similar repositories for nd2
Users that are interested in nd2 are comparing it to the libraries listed below
Sorting:
- ☆49Updated last month
- A napari plugin for clustering objects according to their properties.☆85Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆88Updated last week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 7 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- Multiple file format reading directly into napari using pure Python☆36Updated 10 months ago
- Cookiecutter for napari plugins☆69Updated 6 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated last month
- Track and lineage visualization with btrack and Napari☆45Updated 7 months ago
- ☆23Updated 3 weeks ago
- 1d plotting in napari-based canvas.☆26Updated this week
- Python libraries for loading, running and packaging bioimage.io models☆31Updated last week
- ☆33Updated last week
- native Python dataclasses for the OME data model☆56Updated last month
- ☆29Updated last year
- Command-line client for Fractal☆46Updated last week
- ☆81Updated 2 months ago
- Lectures for a napari training course☆50Updated last year
- A minimal Python package for reading OME-Zarr (meta)data☆29Updated this week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month
- Browse your OMERO database from within napari.☆37Updated this week
- StarDist plugin for napari☆38Updated 9 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last month
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆80Updated last week
- Accurate and efficient spot detection for microscopy data☆76Updated last week
- ☆15Updated 2 years ago
- ☆18Updated last month
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆67Updated last month
- ☆12Updated last year
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆26Updated last year