tlambert03 / nd2Links
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
☆76Updated last week
Alternatives and similar repositories for nd2
Users that are interested in nd2 are comparing it to the libraries listed below
Sorting:
- Image reading, metadata management, and image writing for Microscopy images in Python☆112Updated last month
- ☆51Updated 9 months ago
- A napari plugin for clustering objects according to their properties.☆90Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 months ago
- Accurate and efficient spot detection for microscopy data☆117Updated last week
- Multiple file format reading directly into napari using pure Python☆39Updated 3 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆79Updated last year
- ☆91Updated 3 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- ☆36Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated last week
- Track and lineage visualization with btrack and Napari☆45Updated 4 months ago
- Python libraries for loading, running and packaging bioimage.io models☆35Updated this week
- ☆12Updated last year
- A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.☆11Updated last week
- Browse your OMERO database from within napari.☆40Updated 3 weeks ago
- Scientific Dataset Quality Control and Data Exploration Tool☆20Updated this week
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- StarDist plugin for napari☆38Updated last year
- Light microscopy simulation in python.☆43Updated last week
- Ngio is a Python library to streamline OME-Zarr image analysis workflows.☆38Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Updated 3 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆177Updated 3 weeks ago
- A napari plugin for zarr backed OME-NGFF images☆43Updated 3 weeks ago
- native Python dataclasses for the OME data model☆65Updated last week
- A template repo used to make new napari plugins☆31Updated last week
- Lectures for a napari training course☆50Updated 2 years ago
- Cell tracking and segmentation software☆168Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆63Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Updated 5 months ago