Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
☆80Jul 6, 2026Updated 2 weeks ago
Alternatives and similar repositories for nd2
Users that are interested in nd2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Image reading, metadata management, and image writing for Microscopy images in Python☆127Jul 1, 2026Updated 2 weeks ago
- ☆26Jun 3, 2026Updated last month
- ☆15Apr 1, 2026Updated 3 months ago
- Workshop materials for "Images to Knowledge with ImageJ and Friends" 2020 conference☆13Apr 26, 2022Updated 4 years ago
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Multiple file format reading directly into napari using pure Python☆38Oct 15, 2025Updated 9 months ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆49Jan 15, 2025Updated last year
- ☆20May 1, 2025Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆62Apr 24, 2026Updated 2 months ago
- Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.☆13May 13, 2022Updated 4 years ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆79Jul 6, 2026Updated 2 weeks ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆96Jul 7, 2026Updated 2 weeks ago
- ☆105Mar 12, 2026Updated 4 months ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Sep 15, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆23Aug 6, 2025Updated 11 months ago
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆21Jul 6, 2026Updated 2 weeks ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆41Updated this week
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆29Apr 6, 2026Updated 3 months ago
- Yet Another Ome-ZARR Schema❗️☆23Jul 1, 2026Updated 2 weeks ago
- CUDA-accelerated reconstruction for 3D-structured-illumination☆13Nov 24, 2025Updated 7 months ago
- Pure python/C++ micro-manager ecosystem☆52Updated this week
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆57May 20, 2024Updated 2 years ago
- Automated batch processing of cell and tissue microscopy image data in Napari☆22Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Reference implementation of the Graph Exchange File Format☆41Jul 14, 2026Updated last week
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- Transformer-based cell tracking for live-cell microscopy☆137Updated this week
- Real-time feedback control microscopy for automation of optogenetic targeting☆16Jul 13, 2026Updated last week
- Particle tracking by solving linear assignment problem.☆66Jul 5, 2026Updated 2 weeks ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Jul 6, 2026Updated 2 weeks ago
- Template for creating a new python repository☆13Sep 28, 2025Updated 9 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆57May 1, 2025Updated last year
- Accurate and efficient spot detection for microscopy data☆137Jun 8, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Jun 5, 2024Updated 2 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- python tools for BigDataViewer☆23Jul 2, 2026Updated 2 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated last year
- Python 3.x wrapper for Photometrics and QImaging PVCAM based cameras☆44Mar 3, 2026Updated 4 months ago
- An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)☆13Dec 7, 2022Updated 3 years ago
- The Fluorescent Protein Database☆82Updated this week