talmolab / sleap-roots
Analysis tools for SLEAP-based plant root phenotyping.
☆10Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for sleap-roots
- Static plotting for spatialdata☆35Updated this week
- ☆38Updated this week
- Minimum Information about Tissue Imaging☆20Updated last year
- A multi-dimensional spatial image data structure for scientific Python.☆37Updated 3 months ago
- Spatial Transcriptomics Dashboard☆28Updated last year
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆19Updated last week
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated 3 weeks ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated this week
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- ☆14Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆13Updated this week
- ☆29Updated 6 months ago
- ☆43Updated last week
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆45Updated 4 months ago
- A scalable machine learning pipeline for probe specificity prediction.☆11Updated 9 months ago
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆16Updated 2 weeks ago
- Interactive visualization of spatial omics data☆41Updated last week
- Fast reconstruction of spatial networks from bioimages.☆24Updated 3 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆23Updated this week
- Multi-omics factor analysis v2☆35Updated 3 weeks ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- Python API and Jupyter widget for Vitessce☆40Updated last week
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆15Updated 2 weeks ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆21Updated last month
- Genomic Features in Python from BioConductor's AnnotationHub☆19Updated this week
- a minimal, scriptable genome browser for python☆48Updated 6 months ago
- Your Personal Assistant in Computational Bioimaging.☆35Updated 2 months ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆44Updated last month
- ☆19Updated last year