talmolab / sleap-roots
Analysis tools for SLEAP-based plant root phenotyping.
☆11Updated this week
Alternatives and similar repositories for sleap-roots:
Users that are interested in sleap-roots are comparing it to the libraries listed below
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆18Updated this week
- Static plotting for spatialdata☆57Updated this week
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆15Updated last month
- Framework for image and flow cytometry analysis☆25Updated last week
- ☆26Updated 6 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆42Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Image registration (alignment) software for large microscopy images☆25Updated last year
- ☆59Updated this week
- ☆53Updated this week
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆13Updated this week
- ☆17Updated last month
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆14Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 2 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆26Updated this week
- Optimal gating strategies for flow and mass cytometry.☆11Updated 2 weeks ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- ☆30Updated last year
- ☆28Updated 6 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated 2 months ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆12Updated 3 weeks ago
- ☆29Updated last year
- Deep learning based spot detection for FISH images.☆21Updated 8 months ago
- Interactive visualization of spatial omics data☆53Updated this week
- The complete FlowSOM package known from R, now available in Python!☆19Updated this week
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- ☆15Updated 7 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- Python API and Jupyter widget for Vitessce☆44Updated this week