talmolab / sleap-rootsLinks
Analysis tools for SLEAP-based plant root phenotyping.
☆11Updated 3 weeks ago
Alternatives and similar repositories for sleap-roots
Users that are interested in sleap-roots are comparing it to the libraries listed below
Sorting:
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆42Updated last month
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆28Updated 2 weeks ago
- script + metadata = standalone component☆42Updated this week
- Optimal gating strategies for flow and mass cytometry.☆13Updated 3 months ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆19Updated last week
- Fast reconstruction of spatial networks from bioimages.☆25Updated 2 months ago
- Build contrasts for models defined with formulaic☆13Updated last week
- A Python package for single-cell spatial image analysis.☆18Updated last year
- Static plotting for spatialdata☆62Updated this week
- Fit generalized linear models in python.☆28Updated 2 years ago
- Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.☆14Updated this week
- Minimum Information about Tissue Imaging☆20Updated last year
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Updated 3 years ago
- Visualising data frames as funky heatmaps 📊, the Python implementation☆17Updated 5 months ago
- ☆30Updated last year
- ☆11Updated 3 months ago
- A Python package for landscape genomic simulation☆10Updated last month
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆47Updated this week
- ☆21Updated last week
- ☆15Updated 10 months ago
- Light-weight Jupyter notebook tracker.☆34Updated 2 months ago
- ☆54Updated this week
- ☆11Updated last month
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆12Updated last week
- A Matlab package to perform Pareto Task Inference (ParTI), which infers tasks from high-dimensional datasets.☆14Updated 5 years ago
- ☆27Updated 9 months ago
- A Python package for gene network analysis☆32Updated 3 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- ☆11Updated 3 weeks ago
- ☆35Updated 4 months ago