fabrylab / pyTFM
2 dimensional particle image velocimetry, traction force microscopy and monolayer stress microscopy
☆22Updated last year
Alternatives and similar repositories for pyTFM:
Users that are interested in pyTFM are comparing it to the libraries listed below
- 3D Traction Force Microscopy with Python. Calculate cell-generated forces in collagen or other (nonlinear) biopolymer networks.☆13Updated this week
- ☆20Updated last year
- Particle tracking by solving linear assignment problem.☆51Updated 2 weeks ago
- Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the …☆27Updated last week
- python library for particles tracking in 2D+t and 3D+t scientific images☆14Updated 10 months ago
- This is an older version of cytosim, a cytoskeleton simulation engine☆27Updated 3 years ago
- Process and analyze surfaces using vedo in napari.☆23Updated 11 months ago
- 1d plotting in napari-based canvas.☆26Updated this week
- Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents☆21Updated last month
- Fast local thickness in 3D and 2D☆13Updated last year
- An open-source Python library for the analysis of fluorescence lifetime and hyperspectral images using the phasor approach.☆29Updated 2 weeks ago
- Gamified image segmentation quality estimation☆17Updated 2 years ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆74Updated 4 months ago
- Software for Quantifying Mitochondrial Content in Live Cells☆26Updated 10 months ago
- Linking napari layers with Matplotlib plots☆40Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆27Updated 3 weeks ago
- Leica Image Format (LIF) file reader for Python☆34Updated last month
- GPU accelerated version of OpenPIV in Python☆21Updated 2 months ago
- Python GUI for the OpenPTV library, `liboptv`☆19Updated 2 weeks ago
- Things we use regularly☆29Updated 8 months ago
- Let's infer the forces that cells generate during time series by looking at the angles they make with each other.☆9Updated last year
- A MATLAB class for Mean Square Displacement analysis.☆37Updated 4 years ago
- Segment images by pixel classification based on pre-trained convolutional layer feature extraction☆32Updated 2 weeks ago
- ☆49Updated 6 months ago
- Napari training material for a workshop by the CZI funded initiatives LIBRE hub, Napari, and several amazing volunteers☆10Updated last year
- A python script editor plugin for napari☆11Updated last year
- ☆17Updated last week
- A napari plugin for making animations☆84Updated 7 months ago
- ExTrack MLE for diffusive noisy single-particle tracks☆13Updated this week