nanoporetech / pipeline-polya-ng
Pipeline for calling poly(A) tail lengths from nanopore direct RNA data using nanopolish
☆10Updated 4 years ago
Alternatives and similar repositories for pipeline-polya-ng:
Users that are interested in pipeline-polya-ng are comparing it to the libraries listed below
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 10 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆11Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- ☆17Updated 2 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 11 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated 8 months ago
- Two pass alignment for long reads☆21Updated 3 years ago
- ☆10Updated this week
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆12Updated 2 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆18Updated 10 months ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated 3 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated 3 weeks ago
- A transposition caller.☆10Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆21Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Updated 3 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Reconstruction of focal amplifications with long reads☆18Updated this week
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- A method for measuring chromosome-specific telomere length from long reads☆20Updated 9 months ago
- A new tool to infer sex from massively parallel sequencing data.☆16Updated 8 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆22Updated 8 months ago
- exploratory scripts for clustering ccs amplicon data☆10Updated 4 years ago