nanoporetech / pipeline-polya-ng
Pipeline for calling poly(A) tail lengths from nanopore direct RNA data using nanopolish
☆10Updated 4 years ago
Alternatives and similar repositories for pipeline-polya-ng:
Users that are interested in pipeline-polya-ng are comparing it to the libraries listed below
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆11Updated 4 years ago
- toolkit to process gtf files☆16Updated 3 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 9 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆20Updated 3 years ago
- Transcript assembly and quantification for RNA-Seq☆8Updated 4 years ago
- Third-generation fusion gene detection☆13Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated last month
- A gene fusion caller for long-read transcriptome sequencing data.☆17Updated 9 months ago
- ☆17Updated 2 years ago
- ☆10Updated this week
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 9 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 5 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Reconstruction of focal amplifications with long reads☆17Updated this week
- ☆27Updated 5 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated last year
- A transposition caller.☆10Updated last year
- Two pass alignment for long reads☆21Updated 3 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- ☆33Updated 9 months ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Updated 9 months ago
- ☆28Updated 2 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆23Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago