NGSeq / ViraPipeLinks
ViraPipe is distributed Apache Spark based metagenome analytics pipeline for scalable detection of pathogens from NGS data
☆16Updated 7 years ago
Alternatives and similar repositories for ViraPipe
Users that are interested in ViraPipe are comparing it to the libraries listed below
Sorting:
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 4 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Updated 7 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Interactive tools for metagenome visualization and binning in R☆27Updated 7 years ago
- Reduced Alphabet based Protein similarity Search☆40Updated 5 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Updated 2 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆52Updated 3 months ago
- MicrobeDirectory 2.0☆22Updated 5 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 7 years ago
- Nanopore desc☆18Updated 9 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Updated 2 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- The Zika bioinformatics pipeline☆36Updated 5 years ago
- ☆17Updated 7 years ago
- Visualization of the pan-genome output by panX☆66Updated 7 months ago
- ☆35Updated 2 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 4 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆33Updated last week
- A very simple BLAST filtering pipeline☆19Updated 11 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆77Updated last month
- Create your own PanViz visualizations☆21Updated 8 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 3 years ago