ViraPipe is distributed Apache Spark based metagenome analytics pipeline for scalable detection of pathogens from NGS data
☆16Jul 3, 2018Updated 7 years ago
Alternatives and similar repositories for ViraPipe
Users that are interested in ViraPipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Overlapped primer design for entire coding sequence of the gene with specificity check☆13Feb 22, 2022Updated 4 years ago
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 7 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 7 years ago
- Common scripts☆15Apr 2, 2026Updated last week
- Consensus assembly and variant calling workflow.☆12May 26, 2015Updated 10 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 3 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- ☆13Jun 7, 2024Updated last year
- Nextstrain build for Zika virus☆10Dec 19, 2025Updated 3 months ago
- interactive phylogenetic tree viewer☆11Jun 26, 2024Updated last year
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- YAMP: Yet Another Metagenomic Pipeline☆62Jun 5, 2023Updated 2 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tool to generate random data from a Sagger/OpenAPI spec☆12May 20, 2019Updated 6 years ago
- Docker image build for nextstrain/base☆12Mar 19, 2026Updated 3 weeks ago
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 9 years ago
- A fast and accurate command line tool for extracting text from PDF files.☆21Oct 4, 2023Updated 2 years ago
- VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false …☆16Jan 17, 2022Updated 4 years ago
- Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices☆11Feb 20, 2020Updated 6 years ago
- Coprolite host Identification pipeline☆12Mar 7, 2026Updated last month
- Repository for the SDP Vocabulary Service.☆17Sep 9, 2020Updated 5 years ago
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive…☆17Aug 7, 2024Updated last year
- Flask + uWSGI + Nginx Docker config☆15Oct 27, 2015Updated 10 years ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Apr 3, 2026Updated last week
- ☆15Dec 11, 2024Updated last year
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated last year
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Mar 9, 2020Updated 6 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- Use cloud technology to annotate human sequence variants in parallel.☆11Jun 4, 2021Updated 4 years ago
- Slides, Code, and Exercises to support [R Quickstart tutorial](http://conferences.oreilly.com/strata/hadoop-big-data-ca/public/schedule/d…☆10Mar 25, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- An automatic question generation system using rule based NLP processing techniques.☆10Feb 9, 2020Updated 6 years ago
- Kedro Snowflake / Snowpark plugin☆14Jul 19, 2024Updated last year
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 3 years ago
- NanoDJ: A Dockerized Jupyter Notebook for Interactive Oxford Nanopore MinION Sequence Manipulation and Genome Assembly☆51Dec 16, 2019Updated 6 years ago
- Workflows I find helpful for fungal genome annotation☆21Jun 30, 2023Updated 2 years ago