ViraPipe is distributed Apache Spark based metagenome analytics pipeline for scalable detection of pathogens from NGS data
☆16Jul 3, 2018Updated 8 years ago
Alternatives and similar repositories for ViraPipe
Users that are interested in ViraPipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Overlapped primer design for entire coding sequence of the gene with specificity check☆13Feb 22, 2022Updated 4 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 8 years ago
- JBrowse plugin that supports smallRNA alignments☆12Apr 8, 2019Updated 7 years ago
- Common scripts☆15Jun 24, 2026Updated last month
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- ☆13Jun 7, 2024Updated 2 years ago
- Nextstrain build for Zika virus☆11Updated this week
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 6 years ago
- Learn fundamentals of scientific computing for biochemistry using Jupyter notebooks in Python☆17Dec 2, 2025Updated 7 months ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- interactive phylogenetic tree viewer☆11Jun 26, 2024Updated 2 years ago
- YAMP: Yet Another Metagenomic Pipeline☆62Jun 5, 2023Updated 3 years ago
- Tool to generate random data from a Sagger/OpenAPI spec☆12May 20, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Docker image build for nextstrain/base☆12Jun 24, 2026Updated last month
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 10 years ago
- Repository for the SDP Vocabulary Service.☆17Sep 9, 2020Updated 5 years ago
- VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false …☆16Jan 17, 2022Updated 4 years ago
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 7 years ago
- Coprolite host Identification pipeline☆13Apr 30, 2026Updated 2 months ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Updated this week
- Flask + uWSGI + Nginx Docker config☆15Oct 27, 2015Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- Add new taxa or taxonomic groups to the NCBI Taxdump files☆20Mar 9, 2020Updated 6 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- ITEP - Integrated Toolkit for Exploration of microbial Pan-genomes☆28Feb 15, 2019Updated 7 years ago
- Perl module to read Excel binary files☆19Nov 23, 2025Updated 8 months ago
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- Slides, Code, and Exercises to support [R Quickstart tutorial](http://conferences.oreilly.com/strata/hadoop-big-data-ca/public/schedule/d…☆10Mar 25, 2016Updated 10 years ago
- Workflows I find helpful for fungal genome annotation☆22Jun 30, 2023Updated 3 years ago
- An automatic question generation system using rule based NLP processing techniques.☆10Feb 9, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 3 years ago
- ☆15Dec 11, 2024Updated last year
- NanoDJ: A Dockerized Jupyter Notebook for Interactive Oxford Nanopore MinION Sequence Manipulation and Genome Assembly☆51Dec 16, 2019Updated 6 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- Template course website for the Designing a Data Science Classroom workshop at rstudio::conf(2022).☆11Jul 27, 2022Updated 3 years ago
- An automated post sequencing data processing pipeline for Illumina HiSeq☆14Aug 28, 2025Updated 10 months ago