ngs-docs / 2016-adv-begin-shell-genomicsLinks
Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html
☆12Updated 7 years ago
Alternatives and similar repositories for 2016-adv-begin-shell-genomics
Users that are interested in 2016-adv-begin-shell-genomics are comparing it to the libraries listed below
Sorting:
- ☆15Updated 3 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆31Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- ☆35Updated 9 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆70Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 4 years ago
- ☆33Updated 3 years ago
- Tools for visualizing genomics data☆69Updated 3 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 10 months ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- ☆29Updated 5 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- http://bioinformatics-core-shared-training.github.io/cruk-bioinf-sschool☆34Updated 9 years ago
- DriverPower☆26Updated 6 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆16Updated 13 years ago