singularityhub / singularity-deploy
Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client
☆16Updated last year
Alternatives and similar repositories for singularity-deploy
Users that are interested in singularity-deploy are comparing it to the libraries listed below
Sorting:
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Partial reimplementation of bcftools for VCF Zarr☆13Updated this week
- A demo and tutorial for how to use git and singularity to make your research more portable and reproducible☆26Updated 8 years ago
- Build and maintain multiple custom conda environments all in one place.☆38Updated 5 months ago
- CLI tool to verify workflow reproducibility☆16Updated last year
- deploy a snakemake pipeline directly from version control (under development)☆24Updated 2 months ago
- Flexible omics pipeline☆18Updated this week
- Introduction to Snakemake for Bioinformatics☆19Updated last week
- A unified array job submitter for LSF, SGE/UGE and Slurm☆32Updated 7 months ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆31Updated this week
- A statically generated catalog of available Snakemake workflows☆32Updated this week
- Misc. utilities☆11Updated 5 years ago
- dead Simple Queue - Slurm arrays for files with jobs in them.☆24Updated 3 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Webinars&Tutorial on Containers on HPC and Cloud with Singularity☆27Updated 3 years ago
- Funding schemes and travel grant opportunities for postdocs☆50Updated 6 years ago
- A Github action for running a Snakemake workflow☆58Updated last month
- X things you should take into consideration if you code for big data analysis☆23Updated 6 years ago
- Color DNA/RNA bases in terminal output☆21Updated 7 years ago
- Should you cite this software?☆31Updated 4 years ago
- ☆10Updated 6 months ago
- ☆16Updated last year
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- Nextflow language support for Visual Studio Editor☆34Updated this week
- ☆13Updated 7 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆16Updated 10 months ago
- definition files and wrapper scripts used by NIH HPC staff to install user-facing apps on the Biowulf cluster☆30Updated 4 years ago
- Reproducible Phylogenomics☆22Updated 8 years ago
- Snakemake tutorial materials☆18Updated 5 years ago
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆49Updated last year