A python implementation of spatial entropy
☆25Dec 15, 2023Updated 2 years ago
Alternatives and similar repositories for SpatialEntropy
Users that are interested in SpatialEntropy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🔄 Hot module reload for python, automatically reload your code when files are modified. No need to modify source code.☆34Jul 20, 2026Updated 2 months ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆18May 10, 2026Updated 4 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated last year
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated 2 years ago
- Toolkit for single-cell DNA methylation analysis.☆50May 25, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scType rewritten in python☆25Nov 7, 2024Updated last year
- ☆56Sep 2, 2026Updated 2 weeks ago
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Mar 13, 2023Updated 3 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆23Jul 13, 2023Updated 3 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆30Apr 10, 2019Updated 7 years ago
- spatial transcriptome, single cell☆77Mar 18, 2023Updated 3 years ago
- Analysis of data produced by cvapipe for the variance paper☆24Dec 23, 2024Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Repository in Support of EAGLE Submission☆28Oct 11, 2025Updated 11 months ago
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated last year
- Spatial Single-Cell Analysis Toolkit☆116Sep 9, 2026Updated last week
- Methods for visualization and analysis of spatially-resolved gene expression☆23Updated this week
- A data analysis package for high-dimensional, multi-block data.☆12Jan 13, 2022Updated 4 years ago
- Package for the analysis of Transcripts outside segmented cells in ST data☆31Updated this week
- ☆12Mar 20, 2024Updated 2 years ago
- Dual-attention Enhanced Spatial Transcriptomics Denoiser☆13May 8, 2025Updated last year
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Awesome generative spatial omics tools☆35Jul 17, 2026Updated 2 months ago
- ☆13Jun 6, 2024Updated 2 years ago
- ☆20Jul 17, 2019Updated 7 years ago
- ☆14Mar 28, 2025Updated last year
- Spatial direct messaging detected by bivariate Moran☆33Jul 16, 2025Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆37Apr 1, 2025Updated last year
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)☆324Aug 23, 2026Updated 3 weeks ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆15Apr 29, 2025Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆86Feb 17, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Apr 24, 2024Updated 2 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- ☆43Jan 12, 2026Updated 8 months ago
- ☆34Feb 25, 2025Updated last year
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆12Oct 7, 2019Updated 6 years ago
- WSICS☆30Apr 19, 2019Updated 7 years ago
- GLASS consortium☆14May 31, 2022Updated 4 years ago