Mr-Milk / SpatialEntropy
A python implementation of spatial entropy
☆23Updated last year
Alternatives and similar repositories for SpatialEntropy
Users that are interested in SpatialEntropy are comparing it to the libraries listed below
Sorting:
- ☆24Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆27Updated 2 years ago
- ☆12Updated last year
- The Single-Cell Pathology Landscape of Breast Cancer☆26Updated 5 years ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆21Updated last month
- ☆45Updated 2 months ago
- ☆15Updated last month
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆10Updated last year
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 8 months ago
- data for spacejam2☆17Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆34Updated 10 months ago
- ☆25Updated 5 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆43Updated 2 weeks ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆30Updated 5 years ago
- Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets☆12Updated 3 years ago
- A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of h…☆25Updated 3 years ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆23Updated 2 years ago
- A public MuSpAn page for community discussions and issue reporting.☆11Updated last week
- Methods for visualization and analysis of spatially-resolved gene expression☆17Updated last week
- Accessible and interoperable whole slide image analysis☆35Updated last week
- ☆14Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 11 months ago
- ☆55Updated last year
- ☆55Updated 2 years ago
- Nonnegative spatial factorization for multivariate count data☆58Updated last year
- Interactive applications of stlearn☆15Updated 2 years ago
- Tool to create images and configuration files for Minerva-Story☆16Updated last month
- Test genes for Spatial Variation☆14Updated 4 months ago
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆56Updated 3 years ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆14Updated 2 months ago