Mr-Milk / SpatialEntropy
A python implementation of spatial entropy
☆20Updated 9 months ago
Related projects: ⓘ
- Shared Nearest Neighbor Clustering Algorithm: Implementation and Evaluation☆22Updated 4 years ago
- ☆10Updated last year
- Python implementation of the ElPiGraph algorithm with cpu and gpu support☆15Updated 5 months ago
- Archetypal Analysis network (AAnet)☆28Updated last month
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆36Updated last year
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Updated 5 years ago
- Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets☆12Updated 2 years ago
- ☆11Updated 4 years ago
- ☆60Updated last year
- Spatially aware dimension reduction for spatial transcriptomics.☆39Updated 5 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆40Updated 2 months ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated last year
- ☆60Updated 10 months ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆16Updated 4 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆24Updated last year
- ☆14Updated last year
- An implementation of Consensus clustering in Python☆58Updated 4 months ago
- scPretrain: Multi-task self-supervised learning for cell type classification☆21Updated 2 years ago
- a deep learning approach for integrative cancer subtyping of multi-omics data☆37Updated 4 months ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆30Updated 2 years ago
- A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of h…☆25Updated 2 years ago
- ☆47Updated 3 years ago
- ☆16Updated 4 years ago
- Convolutional neural networks for extracting a "deep stroma score" from histological images of human cancer☆18Updated 4 years ago
- Work with trained factor models in Python☆25Updated 7 months ago
- TCGA BLCA tmb prediction by Hongming Xu☆13Updated 3 years ago
- Python Implementation of SIMLR for single-cell visualization and analysis☆22Updated 2 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆36Updated last year
- Generative adversarial networks for single-cell RNA-seq imputation☆36Updated 4 years ago
- Graph-based foundation model for spatial transcriptomics data.☆14Updated this week