A python implementation of spatial entropy
☆25Dec 15, 2023Updated 2 years ago
Alternatives and similar repositories for SpatialEntropy
Users that are interested in SpatialEntropy are comparing it to the libraries listed below
Sorting:
- Repository in Support of EAGLE Submission☆21Oct 11, 2025Updated 4 months ago
- 🔄 Hot module reload for python, automatically reload your code when files are modified. No need to modify source code.☆33Nov 20, 2025Updated 3 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 7 months ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated last year
- Dynamic inference from single-cell snapshots by optimal transport☆20Mar 14, 2024Updated last year
- Toolkit for single-cell DNA methylation analysis.☆46Updated this week
- ☆20Jul 17, 2019Updated 6 years ago
- scType rewritten in python☆25Nov 7, 2024Updated last year
- Analysis of data produced by cvapipe for the variance paper☆24Dec 23, 2024Updated last year
- Methods for visualization and analysis of spatially-resolved gene expression☆22Aug 14, 2025Updated 6 months ago
- ☆52Oct 9, 2025Updated 4 months ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆21Jul 13, 2023Updated 2 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Mar 13, 2023Updated 2 years ago
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated 8 months ago
- Spatial Single-Cell Analysis Toolkit☆110Feb 20, 2026Updated last week
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 6 years ago
- Spatial direct messaging detected by bivariate Moran☆32Jul 16, 2025Updated 7 months ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- Static plotting for spatialdata☆73Feb 19, 2026Updated last week
- Accelerated, Python-only, single-cell integration benchmarking metrics☆86Updated this week
- spatial transcriptome, single cell☆73Mar 18, 2023Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆81Feb 17, 2025Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆34Apr 1, 2025Updated 11 months ago
- WSICS☆30Apr 19, 2019Updated 6 years ago
- ☆33Feb 25, 2025Updated last year
- ☆10Dec 17, 2019Updated 6 years ago
- ☆37Sep 5, 2024Updated last year
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆40Dec 22, 2020Updated 5 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Sep 23, 2025Updated 5 months ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 5 years ago
- A package for the analysis of Imaging Mass Cytometry data☆13Jan 21, 2026Updated last month
- Python implementation of various 2D and 3D compactness measures.☆10Aug 17, 2022Updated 3 years ago
- A data analysis package for high-dimensional, multi-block data.☆12Jan 13, 2022Updated 4 years ago
- Jupyter Notebooks from book UNDERSTANDING DEEP LEARNING (Prof Simon Prince) that I could solve.☆12Mar 20, 2024Updated last year
- Demonstration of the UPGMA hierarchal clustering algorithm in Pandas, Seaborn, and Scipy☆11Sep 29, 2019Updated 6 years ago
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆300Updated this week