A python implementation of spatial entropy
☆25Dec 15, 2023Updated 2 years ago
Alternatives and similar repositories for SpatialEntropy
Users that are interested in SpatialEntropy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository in Support of EAGLE Submission☆22Oct 11, 2025Updated 6 months ago
- 🔄 Hot module reload for python, automatically reload your code when files are modified. No need to modify source code.☆33Nov 20, 2025Updated 4 months ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 8 months ago
- Toolkit for single-cell DNA methylation analysis.☆47Mar 16, 2026Updated 3 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Dynamic inference from single-cell snapshots by optimal transport☆20Mar 14, 2024Updated 2 years ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated last year
- scType rewritten in python☆25Nov 7, 2024Updated last year
- ☆53Oct 9, 2025Updated 6 months ago
- Analysis of data produced by cvapipe for the variance paper☆24Dec 23, 2024Updated last year
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆21Jul 13, 2023Updated 2 years ago
- spatial transcriptome, single cell☆74Mar 18, 2023Updated 3 years ago
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Mar 13, 2023Updated 3 years ago
- Image Mass Cytometry analysis pipeline☆26Jun 3, 2025Updated 10 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- Spatial Single-Cell Analysis Toolkit☆110Mar 11, 2026Updated 3 weeks ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 7 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆23Mar 19, 2026Updated 3 weeks ago
- ☆12Mar 20, 2024Updated 2 years ago
- Static plotting for spatialdata☆76Apr 3, 2026Updated last week
- Dual-attention Enhanced Spatial Transcriptomics Denoiser☆12May 8, 2025Updated 11 months ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- ☆13Jun 6, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆19Jul 17, 2019Updated 6 years ago
- Spatial direct messaging detected by bivariate Moran☆31Jul 16, 2025Updated 8 months ago
- ☆14Mar 28, 2025Updated last year
- Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)☆309Feb 3, 2026Updated 2 months ago
- ☆23Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆83Feb 17, 2025Updated last year
- ☆42Jan 12, 2026Updated 2 months ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated 11 months ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆35Apr 1, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆10Apr 24, 2024Updated last year
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- ☆34Feb 25, 2025Updated last year
- Awesome generative spatial omics tools☆23Oct 17, 2025Updated 5 months ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆90Mar 31, 2026Updated last week
- A data analysis package for high-dimensional, multi-block data.☆12Jan 13, 2022Updated 4 years ago