Alternatives and similar repositories for mathiomica

Users that are interested in mathiomica are comparing it to the libraries listed below

• opencobra / MASS-Toolbox
  Mass Action Stoichiometric Simulation (MASS) Toolbox
  ☆12Updated 8 years ago
• opencobra / driven
  Data-Driven Constraint-based analysis
  ☆12Updated 3 years ago
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆36Updated 2 years ago
• dmgatti / DOQTL
  QTL mapping for Diversity Outbred mice (and other multi-founder advanced intercrosses)
  ☆14Updated last year
• jfrelinger / fcm
  a python library for working with flow cytometry data.
  ☆14Updated 10 years ago
• carpentries-incubator / snakemake-novice-bioinformatics
  Introduction to Snakemake for Bioinformatics
  ☆22Updated this week
• whole-cell-tutors / wholecell
  COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model
  ☆10Updated 9 years ago
• biomart / BioMart
  ☆21Updated 9 years ago
• dpryan79 / Misc
  Misc. utilities
  ☆11Updated 6 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆37Updated 2 years ago
• Snakemake-Profiles / pbs-torque
  ☆17Updated 2 years ago
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆16Updated 3 months ago
• ajrichards / htsint
  A Python library to work with high-throughput sequencing data in the context of data integration
  ☆14Updated 8 years ago
• bicycle1885 / CellFishing.jl
  Fast and scalable cell search tool
  ☆44Updated 6 years ago
• Edinburgh-Genome-Foundry / Primavera
  Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
  ☆33Updated 9 months ago
• MICommunity / ComplexViewer
  web based visualisation of molecular interaction data
  ☆12Updated 8 months ago
• reimandlab / ActiveDriverDB
  ActiveDriverDB
  ☆12Updated 2 years ago
• ElisabethRoesch / Perspective_Julia_for_Biologists
  Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I
  ☆101Updated 3 years ago
• mircare / Brewery
  State-of-the-art ab initio prediction of 1D protein structure annotations
  ☆14Updated 4 years ago
• NIH-HPC / singularity-examples
  example singularity definition files and demos
  ☆28Updated 7 years ago
• klavinslab / coral
  Coral, a library and framework for specifying synthetic biology design processes.
  ☆34Updated 3 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last month
• OBF / obf-docs
  Official documents of the Open Bioinformatics Foundation
  ☆41Updated last month
• mr-c / shouldacite
  Should you cite this software?
  ☆33Updated 5 years ago
• BioPAX / Paxtools
  The BioPAX Object Model, API and utilities implemented in Java
  ☆27Updated last year
• kbase / kb_sdk
  Build and test new apps for the KBase platform
  ☆28Updated 11 months ago
• calico / impulse
  Fit phenomenological sigmoid and impulse curves with priors to improve interpretability
  ☆10Updated last year
• FRED-2 / Fred2
  Python-based framework for computational immunomics
  ☆40Updated 4 years ago
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated last year
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 8 months ago