Alternatives and similar repositories for mm3

Users that are interested in mm3 are comparing it to the libraries listed below

• kjamartens / TARDIS-public
  Public releases of TARDIS
  ☆11Updated last year
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated 2 months ago
• tlambert03 / FPbase
  The Fluorescent Protein Database
  ☆71Updated this week
• soft-matter / pims_nd2
  Python nd2 reader based on the ND2 SDK
  ☆17Updated 3 years ago
• Pappulab / localCIDER
  localCIDER - sequence analysis tool for disordered protein sequences
  ☆25Updated 2 years ago
• kalekundert / wellmap
  File format for 96-well plate layouts.
  ☆23Updated 2 years ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• Edinburgh-Genome-Foundry / SnapGeneReader
  👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.
  ☆27Updated 5 months ago
• alexandrovteam / pyimzML
  A parser to read .imzML files with python
  ☆46Updated last year
• csb-toolbox / CSB
  A Python framework for structural bioinformatics.
  ☆13Updated last year
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆114Updated last week
• metaspace2020 / metaspace
  Cloud engine and platform for metabolite annotation for imaging mass spectrometry
  ☆52Updated last week
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 5 months ago
• SBRG / MASSpy
  ☆25Updated 2 years ago
• ScheltemaLab / ChimeraX_XMAS_bundle
  ☆15Updated 2 years ago
• Jhsmit / ColiCoords
  Single-cell fluorescence microscopy data analysis
  ☆26Updated 4 years ago
• AFM-SPM / TopoStats
  An AFM image analysis program to batch process data and obtain statistics from images
  ☆75Updated last week
• MannLabs / structuremap_analysis
  Analysis workflow for investigating the structural context of PTMs
  ☆11Updated last year
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆126Updated this week
• jordisr / cellscape
  Vector graphics cartoons from protein structure
  ☆54Updated 3 years ago
• ethz-institute-of-microbiology / fisher_py
  This python module allows to extract data from the RAW-file-format produces by devices from Thermo Fisher Scientific.
  ☆17Updated 10 months ago
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆21Updated 6 years ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆43Updated 3 weeks ago
• whitews / FlowIO
  A Python library for reading and writing Flow Cytometry Standard (FCS) files
  ☆54Updated 5 months ago
• cytoflow / cytoflow
  A Python toolbox for quantitative, reproducible flow cytometry analysis
  ☆206Updated 3 weeks ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆188Updated 3 months ago
• mmagnus / emacs-pdb-mode
  pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files.…
  ☆13Updated 3 years ago
• FPvisualization / fpvisualization.github.io
  Visualization of fluorescent protein properties with d3.js. Obsolete.
  ☆12Updated last year
• eyurtsev / fcsparser
  A python parser for reading fcs files supporting FCS 2.0, 3.0, 3.1
  ☆80Updated 11 months ago
• JoachimGoedhart / DataViz-protocols
  DataViz protocols book for wet lab scientists
  ☆17Updated 7 months ago