Alternatives and similar repositories for mm3:

Users that are interested in mm3 are comparing it to the libraries listed below

• kjamartens / TARDIS-public
  Public releases of TARDIS
  ☆11Updated last year
• soft-matter / pims_nd2
  Python nd2 reader based on the ND2 SDK
  ☆17Updated 3 years ago
• Jhsmit / ColiCoords
  Single-cell fluorescence microscopy data analysis
  ☆26Updated 3 years ago
• mpicbg-scicomp / tissue_miner
  A toolkit to quantify cell dynamics in living tissues
  ☆11Updated 6 years ago
• tlambert03 / FPbase
  The Fluorescent Protein Database
  ☆66Updated this week
• vanTeeffelenLab / ExTrack
  ExTrack MLE for diffusive noisy single-particle tracks
  ☆13Updated last week
• AlanRace / SpectralAnalysis
  Software for the analysis and interactive exploration of spectral imaging data
  ☆30Updated 4 years ago
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆47Updated 3 months ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆41Updated this week
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• tritemio / FRETBursts
  Burst analysis software for smFRET. **Moved to OpenSMFS organization**
  ☆16Updated 6 years ago
• bioimage-io / bioimageio-chatbot
  Your Personal Assistant in Computational Bioimaging.
  ☆40Updated 3 weeks ago
• alexblaessle / PyFRAP
  PyFRAP: A Python based FRAP analysis tool box
  ☆17Updated 4 years ago
• Photon-HDF5 / phconvert
  Convert Beker&Hickl, PicoQuant and other formats to Photon-HDF5
  ☆16Updated 10 months ago
• kalekundert / wellmap
  File format for 96-well plate layouts.
  ☆23Updated last year
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated 2 weeks ago
• PreibischLab / STIM
  Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.
  ☆27Updated 2 months ago
• AndrewGYork / high_na_single_objective_lightsheet
  Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…
  ☆22Updated 10 months ago
• zjniu / Piscis
  An automatic deep learning algorithm for spot detection in fluorescence microscopy images.
  ☆20Updated 3 months ago
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆10Updated this week
• Fluorescence-Tools / tttrlib
  File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and im…
  ☆21Updated last month
• pswapnesh / misic
  segmentation of rod-shaped bacteria
  ☆15Updated 2 years ago
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated 7 months ago
• alexandrovteam / pyimzML
  A parser to read .imzML files with python
  ☆40Updated 5 months ago
• hdeter / CellTracking
  Python and ImageJ scripts designed to track single cells and analyze fluorescence
  ☆15Updated 3 years ago
• BSEL-UC3M / pMoSS
  pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-vali…
  ☆16Updated last year
• IDR / idr-notebooks
  Jupyter Notebooks for the Image Data Resource
  ☆18Updated 2 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated last week
• tissue-forge / tissue-forge
  Interactive, particle-based physics, chemistry and biology modeling and simulation environment
  ☆22Updated 3 months ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆112Updated last week