mims-harvard / COMPASSLinks
Generalizable AI predicts immunotherapy outcomes across cancers and treatments
☆40Updated last week
Alternatives and similar repositories for COMPASS
Users that are interested in COMPASS are comparing it to the libraries listed below
Sorting:
- ☆87Updated 2 months ago
- Functional Embedding of Gene Signatures☆46Updated last year
- Computational Optimization of DNA Activity (CODA)☆64Updated 6 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 3 years ago
- Python package to load and query ARCHS4 data☆23Updated 3 months ago
- ☆18Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 3 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 7 months ago
- ☆43Updated 2 weeks ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- This is the official codebase for methylGPT : a foundation model for the DNA methylome.☆47Updated 2 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 5 months ago
- ☆27Updated 6 months ago
- CLUMPS adapted to post-translational modifications.☆10Updated 5 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆74Updated 7 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 2 months ago
- ☆56Updated 3 months ago
- ☆35Updated last month
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆49Updated last year
- HLA-II ligand predictor.☆45Updated 2 years ago
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 4 years ago
- ☆42Updated 3 months ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Updated 3 months ago
- ☆26Updated 5 months ago
- ☆38Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- ☆11Updated 5 months ago