qhtjrmin / GPrimerLinks
GPrimer: a fast GPU-based pipeline for primerdesign for qPCR experiments
☆10Updated last week
Alternatives and similar repositories for GPrimer
Users that are interested in GPrimer are comparing it to the libraries listed below
Sorting:
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆25Updated 3 weeks ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆65Updated this week
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆52Updated 3 months ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 2 years ago
- DIAMOND online documentation☆11Updated 4 years ago
- High Resolution Melt Analysis in Python☆20Updated 3 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆57Updated last year
- Bidirectional WFA (Paper)☆46Updated last year
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆17Updated 7 months ago
- orthology assignment using phylogenetic and network analyses☆45Updated 3 months ago
- Small variant calling for haploid samples☆38Updated last month
- A package to annotate protein sequences☆58Updated 3 months ago
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆22Updated last year
- Align multiple amino acid or nucleotide sequences.☆60Updated 4 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 2 years ago
- PECAT, a phased error correct and assembly tool☆51Updated 2 weeks ago
- Tool package to perform in-silico CRISPR analysis and assessment☆27Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆68Updated 4 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- ☆23Updated last year
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- CLI tool to annotate genes with KOfam☆80Updated 2 years ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆21Updated last year
- Associated code for EvoWeaver publication☆13Updated 2 weeks ago
- FastOMA is a scalable software package to infer orthology relationship.☆76Updated this week
- a tool for inferring species tree from sequencing reads☆150Updated 3 months ago
- collection of bioinformatic scripts☆31Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 3 months ago