qhtjrmin / GPrimerLinks
GPrimer: a fast GPU-based pipeline for primerdesign for qPCR experiments
☆10Updated last month
Alternatives and similar repositories for GPrimer
Users that are interested in GPrimer are comparing it to the libraries listed below
Sorting:
- High Resolution Melt Analysis in Python☆20Updated 3 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆22Updated last year
- A Full Featured Multiple Sequence Alignment Editor.☆24Updated 7 years ago
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆47Updated last month
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- Bidirectional WFA (Paper)☆46Updated last year
- Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA☆17Updated 8 months ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆21Updated last year
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆46Updated 8 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆26Updated last week
- A python package for showing JBrowse views☆25Updated last year
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆13Updated 5 years ago
- Efficient target prediction incorporating accessibility of interaction sites☆48Updated 4 months ago
- BACNET is a Java based platform to develop website for multi-omics analysis☆13Updated 2 years ago
- Find common blocks and differences between DNA sequences☆42Updated 3 months ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆48Updated last month
- Reference-guided multiple sequence alignment of viral genomes☆69Updated last month
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆53Updated 4 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆58Updated last year
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year
- Interactive multiscale visualization for structural variation in human genomes☆70Updated 2 weeks ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆33Updated last year
- MIRA sequence assembler☆29Updated 6 months ago
- Small variant calling for haploid samples☆38Updated 2 months ago
- orthology assignment using phylogenetic and network analyses☆45Updated 4 months ago
- ☆63Updated 2 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Align multiple amino acid or nucleotide sequences.☆61Updated 4 years ago
- De novo construction of isoforms from long-read data☆31Updated last month