rivas-lab / snpnetLinks
snpnet - Efficient Lasso Solver for Large-scale genetic variant data
☆20Updated last year
Alternatives and similar repositories for snpnet
Users that are interested in snpnet are comparing it to the libraries listed below
Sorting:
- A rapido and lightweight method for PGS computation☆14Updated 10 months ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆35Updated 3 weeks ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- Sample code for ldsc analyses in UKBB☆32Updated 2 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 2 months ago
- snpnet: Fast and scalable lasso/elastic-net solver for large SNP data☆35Updated last year
- GWAS gold standards repository☆39Updated 2 years ago
- Repository for resources we'd like to share with the community.☆25Updated 3 years ago
- Phenome Exome Association and Correlation Of Key phenotypes☆31Updated 4 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 5 years ago
- ☆16Updated 8 years ago
- cfDNA analysis workflow☆23Updated 2 years ago
- Scripts used for generating Neale Lab UKB results☆21Updated 3 years ago
- Co-expression network management based on WGCNA + k-means☆21Updated 4 years ago
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆31Updated 3 weeks ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 3 months ago
- Open Targets python framework for post-GWAS analysis☆50Updated last week
- GEO RNA-seq Experiments Processing Pipeline☆22Updated 6 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Updated 4 years ago
- ☆21Updated 2 years ago
- Refining the impact of genetic evidence on clinical success☆27Updated last year
- A Julia package for extracting mutation signatures using topic models☆19Updated 3 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆54Updated 2 months ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13Updated 2 years ago
- In-house computational biology workflows at Columbia Neurology☆36Updated 3 months ago
- ☆25Updated 2 months ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated last month