Alternatives and similar repositories for snpnet:

Users that are interested in snpnet are comparing it to the libraries listed below

• Nealelab / UKBB_ldsc_scripts
  Scripts used for generating Neale Lab UKB results
  ☆19Updated 2 years ago
• GRealesM / RapidoPGS
  A rapido and lightweight method for PGS computation
  ☆13Updated last month
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆33Updated last month
• bogdanlab / h2-GRE
  Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…
  ☆14Updated 5 years ago
• rivas-lab / public-resources
  Repository for resources we'd like to share with the community.
  ☆24Updated 2 years ago
• mikelove / mrlocus
  Older repo for MRLocus. See new website for software usage guide:
  ☆15Updated last year
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆30Updated last year
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated 5 months ago
• ericminikel / genetic_support
  Refining the impact of genetic evidence on clinical success
  ☆24Updated 8 months ago
• astrazeneca-cgr-publications / PEACOK
  Phenome Exome Association and Correlation Of Key phenotypes
  ☆28Updated 3 years ago
• yandorazhang / GENESIS
  GENetic Effect-Size distribution Inference from Summary-level data
  ☆14Updated 4 years ago
• opentargets / genetics-gold-standards
  GWAS gold standards repository
  ☆32Updated last year
• statgen / swiss
  Software to help identify overlap between association scan results and GWAS hit catalogs.
  ☆15Updated 2 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆21Updated 2 years ago
• roshchupkin / hase
  Framework for efficient high-dimensional association analyses.
  ☆18Updated 3 years ago
• diptavo / MultiSKAT
  MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…
  ☆11Updated 5 years ago
• opentargets / genetics-colocalisation
  Colocalisation pipeline for Open Targets Genetics
  ☆17Updated 2 years ago
• stephenslab / fastglmpca
  Fast algorithms for GLM-PCA.
  ☆12Updated 2 weeks ago
• andrewGhazi / malacoda
  Bayesian analysis of MPRA and other high-throughput genomic assays
  ☆10Updated 4 years ago
• const-ae / transformGamPoi-Paper
  ☆26Updated last year
• awohns / ldgm
  Software for linkage disequilibrium graphical models
  ☆15Updated last year
• huwenboshi / s-ldxr
  Stratified squared trans-ethnic genetic correlation
  ☆12Updated 2 years ago
• smgogarten / GWASTools
  Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis
  ☆17Updated last week
• xqwen / ptwas
  ☆17Updated 3 years ago
• richardslab / Ei
  Data and code for the Effector index
  ☆13Updated 4 years ago
• jmacdon / LDblocks_GRCh38
  ☆8Updated 6 months ago
• MalteThodberg / awesome-multitrait-gwas
  List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
  ☆30Updated 4 months ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆49Updated 3 weeks ago
• opentargets / genetics-finemapping
  Fine-mapping pipeline for Open Targets Genetics
  ☆26Updated 2 years ago
• xinhe-lab / ctwas
  package for the causal TWAS project
  ☆41Updated last week