kojikoji / deepcolorLinks
☆12Updated 2 years ago
Alternatives and similar repositories for deepcolor
Users that are interested in deepcolor are comparing it to the libraries listed below
Sorting:
- Spatial transcriptomics of heart tissue☆106Updated 2 years ago
- ☆85Updated 2 weeks ago
- An R package for ECM molecule annotation, classification, and analysis☆14Updated last year
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆147Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆117Updated 2 months ago
- Gene group activity utility functions for Scanpy☆99Updated last year
- R implementation of GeneTrajectory☆69Updated last year
- trajectory inference☆105Updated 11 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆147Updated last month
- Direct estimation of mean and covariance from single cell RNA seq experiments☆126Updated 8 months ago
- ☆46Updated last year
- ☆45Updated 2 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆85Updated 11 months ago
- ☆28Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆119Updated 2 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆141Updated 2 years ago
- A docker image for single-cell analysis☆103Updated 2 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆112Updated 3 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆49Updated 5 months ago
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- ☆129Updated last year
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆67Updated 2 months ago
- ☆60Updated this week
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- scDIOR: Single cell data IO softwaRe☆152Updated 3 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆58Updated 2 years ago
- ☆21Updated last year
- ☆48Updated 2 months ago