Alternatives and similar repositories for deepcolor

Users that are interested in deepcolor are comparing it to the libraries listed below

• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆90Updated last year
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆109Updated 4 months ago
• LewisLabUCSD / Ligand-Receptor-Pairs
  Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
  ☆137Updated 2 years ago
• changwn / scFEA
  single cell Flux Estimation Analysis (scFEA) Try the below web server!
  ☆126Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆62Updated last year
• YosefLab / popV
  ☆82Updated this week
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆51Updated 2 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• lanagarmire / Asgard
  ☆43Updated last year
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆159Updated 4 months ago
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆113Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆83Updated 7 months ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆132Updated 5 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆150Updated 6 months ago
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆23Updated 2 years ago
• ostunilab / PDAC_Nature_2023
  ☆20Updated last year
• ShobiStassen / VIA
  trajectory inference
  ☆104Updated 6 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆145Updated 3 years ago
• theislab / spatial_scog_workshop_2022
  Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022
  ☆53Updated 3 years ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• wagnerlab-berkeley / Compass
  ☆25Updated 4 months ago
• Sanofi-Public / enact-pipeline
  Repository for ENACT pipeline for end-to-end analysis of Visium HD data
  ☆56Updated last month
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆90Updated 2 months ago
• data2intelligence / CytoSig
  ☆55Updated 10 months ago
• YosefLab / Compass
  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
  ☆112Updated 6 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆100Updated 5 months ago
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆25Updated 2 months ago
• immunogenomics / RA_Atlas_CITEseq
  RA Synovial Single-cell Multimodal Cell Atlas
  ☆16Updated last year
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆53Updated last year
• JackieHanLab / SenCID
  Senescent Cell Identification
  ☆42Updated last year