kojikoji / deepcolor
☆11Updated last year
Alternatives and similar repositories for deepcolor:
Users that are interested in deepcolor are comparing it to the libraries listed below
- R implementation of GeneTrajectory☆58Updated 11 months ago
- Gene group activity utility functions for Scanpy☆71Updated 3 months ago
- ☆71Updated last week
- Spatial transcriptomics of heart tissue☆81Updated last year
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆54Updated 11 months ago
- ☆61Updated 9 months ago
- A docker image for single-cell analysis☆82Updated 2 months ago
- A tool for semi-automatic cell type harmonization and integration☆102Updated last week
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆22Updated last year
- Using TCR and expression for sequence embedding☆53Updated 2 months ago
- ☆21Updated 2 years ago
- RA Synovial Single-cell Multimodal Cell Atlas☆13Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆69Updated 2 weeks ago
- Predict RNA velocity through deep learning☆66Updated last year
- ☆29Updated last week
- Direct estimation of mean and covariance from single cell RNA seq experiments☆102Updated 2 months ago
- ☆41Updated last year
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆45Updated 7 months ago
- HCA data analysis☆17Updated 4 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆72Updated 4 months ago
- SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/☆23Updated 3 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆61Updated 2 months ago
- ☆44Updated 11 months ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 6 months ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆22Updated 3 months ago
- ☆49Updated 6 months ago
- Tools used in Human Cell Landscape(HCL)☆54Updated 4 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆25Updated last week