kojikoji / deepcolor
☆11Updated last year
Alternatives and similar repositories for deepcolor
Users that are interested in deepcolor are comparing it to the libraries listed below
Sorting:
- R implementation of GeneTrajectory☆58Updated last year
- Gene group activity utility functions for Scanpy☆74Updated 4 months ago
- ☆43Updated last year
- A tool for semi-automatic cell type harmonization and integration☆105Updated last month
- ☆75Updated last week
- ☆64Updated 10 months ago
- ☆42Updated last year
- Predict RNA velocity through deep learning☆69Updated last year
- ☆38Updated 3 weeks ago
- Spatial transcriptomics of heart tissue☆85Updated last year
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆47Updated 9 months ago
- ☆20Updated last month
- ☆21Updated 2 years ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆48Updated this week
- Single cell omics biology annotations☆51Updated 3 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆73Updated last month
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 3 months ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆54Updated 5 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆95Updated 2 months ago
- Senescent Cell Identification☆39Updated last year
- ☆19Updated last year
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆22Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆23Updated last month
- ☆42Updated last week
- HCA data analysis☆18Updated 4 years ago
- ☆40Updated 5 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆73Updated 3 weeks ago
- inferring regulatory cellular dynamics☆41Updated last week
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆26Updated last week