kojikoji / deepcolor
☆11Updated last year
Alternatives and similar repositories for deepcolor:
Users that are interested in deepcolor are comparing it to the libraries listed below
- A tool for semi-automatic cell type harmonization and integration☆102Updated last month
- Spatial transcriptomics of heart tissue☆82Updated last year
- ☆72Updated last week
- Gene group activity utility functions for Scanpy☆72Updated 4 months ago
- R implementation of GeneTrajectory☆58Updated last year
- A docker image for single-cell analysis☆84Updated 2 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- HCA data analysis☆17Updated 4 years ago
- ☆49Updated 6 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆100Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆72Updated last month
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆43Updated last week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆62Updated 3 months ago
- ☆21Updated 2 years ago
- trajectory inference☆97Updated 2 months ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 2 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆60Updated last month
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆103Updated 7 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated 2 weeks ago
- Senescent Cell Identification☆37Updated last year
- ☆34Updated this week
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆55Updated last year
- Single-cell disease relevance score (scDRS)☆127Updated 6 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆71Updated last week
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 3 months ago
- Methods to discover gene programs on single-cell data☆113Updated last month
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆129Updated 2 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago