Mangul-Lab-USC / imrepLinks
ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
☆12Updated last year
Alternatives and similar repositories for imrep
Users that are interested in imrep are comparing it to the libraries listed below
Sorting:
- Mean Alterations Using Discrete Expression☆14Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 10 months ago
- Detect somatic variants from tumor and normal WGS/WXS data☆18Updated last month
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 2 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- WES HLA Typing based on multiple alternative tools☆17Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Summary statistics for repertoires☆17Updated 2 years ago
- Code related to scRNA analysis using the scAmpi workflow☆26Updated 2 weeks ago
- RAGE-seq scripts☆18Updated 3 years ago
- single cell Gene co-Expression Network Analysis☆9Updated 2 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆16Updated 2 years ago
- scGRO-seq analyses codes☆13Updated last year
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- Using BCR and expression for sequence embedding☆22Updated last week
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 7 months ago
- ☆49Updated 10 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- Explore the cancer relevance of your gene list☆51Updated 3 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year