dcroote / singlecell-ige
Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
☆10Updated 3 years ago
Alternatives and similar repositories for singlecell-ige:
Users that are interested in singlecell-ige are comparing it to the libraries listed below
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated 9 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆11Updated 10 months ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆13Updated 7 months ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- Summary statistics for repertoires☆16Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- ☆20Updated 7 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- single-cell decorrelated module networks☆20Updated 5 months ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- Fast motif matching in R☆45Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 6 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- ☆12Updated last year
- Mean Alterations Using Discrete Expression☆14Updated 10 months ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS☆15Updated 2 years ago
- High-definition modeling of chromatin + transcriptomics data☆21Updated 3 months ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆13Updated 3 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 3 months ago
- R package with motifs for use with chromVAR☆25Updated 7 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago