Alternatives and similar repositories for variant-calling-pipeline

Users that are interested in variant-calling-pipeline are comparing it to the libraries listed below

• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆93Updated 5 months ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆65Updated last year
• smithlabcode / dnmtools
  Tools for analyzing DNA methylation data
  ☆44Updated last week
• hbctraining / Intro-to-rnaseq-hpc-salmon
  ☆50Updated 4 years ago
• BioinfoUNIBA / QEdit
  RNA editing quantification in deep transcriptome data
  ☆16Updated 5 months ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆41Updated 3 years ago
• stephenfloor / extract-transcript-regions
  For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…
  ☆36Updated 2 years ago
• dekkerlab / cworld-dekker
  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)
  ☆67Updated 6 years ago
• BioinfoUNIBA / REDItools
  REDItools are python scripts to investigate RNA editing at genomic scale.
  ☆69Updated 5 months ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆57Updated 10 months ago
• a2iEditing / RNAEditingIndexer
  A tool for the calculation of RNA-editing index for RNA seq data
  ☆45Updated this week
• smithlabcode / ribotricer
  A tool for accurately detecting actively translating ORFs from Ribo-seq data
  ☆39Updated 11 months ago
• BioinfoUNIBA / REDItools2
  ☆60Updated 5 months ago
• patidarr / ngs_pipeline
  Exome/Capture/RNASeq Pipeline Implementation using snakemake
  ☆47Updated 7 years ago
• dariober / bioinformatics-cafe
  Unsorted scripts for bioinformatics
  ☆61Updated 4 years ago
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆61Updated 3 years ago
• bowhan / piPipes
  piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School
  ☆61Updated 6 months ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆46Updated 9 months ago
• likelet / LncPipe
  A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets
  ☆84Updated 3 years ago
• parklab / ShatterSeek
  ☆72Updated 2 years ago
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆62Updated 2 years ago
• biocore-ntnu / epic2
  Ultraperformant reimplementation of SICER
  ☆58Updated last month
• nf-core / circrna
  circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
  ☆59Updated last month
• gatk-workflows / gatk4-exome-analysis-pipeline
  This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…
  ☆55Updated 5 years ago
• kundajelab / phantompeakqualtools
  This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…
  ☆60Updated 5 years ago
• dieterich-lab / DCC
  DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …
  ☆37Updated 3 years ago
• gatk-workflows / gatk4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
  ☆84Updated 4 years ago
• zhqingit / giremi
  GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
  ☆44Updated 8 years ago
• zd1 / telseq
  A software for calculating telomere length
  ☆72Updated 7 years ago