HPC based pipelines for variant calling using GATK
☆17Apr 6, 2020Updated 6 years ago
Alternatives and similar repositories for variant-calling-pipeline
Users that are interested in variant-calling-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A R package for QTLseq.☆13Jun 17, 2026Updated 4 months ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 5 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…☆16Nov 22, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)☆11Jan 19, 2022Updated 4 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Oct 13, 2026Updated 3 weeks ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 9 months ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Mar 20, 2023Updated 3 years ago
- git for the Bioconductor package "sangerseqR"☆13Apr 1, 2024Updated 2 years ago
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆31Oct 15, 2020Updated 6 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆22Aug 19, 2025Updated last year
- R code implementing QTL mapping of physiological, behavioral and gene expression phenotypes in Carworth Farms White (CFW) outbred mice.☆10Aug 24, 2017Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Apr 10, 2021Updated 5 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- 用每个窗口的read数作为特征、胎儿浓度作为标签,训练神经网络模型;训练完成的神经网络模型可用于NIPT胎儿浓度的预测☆11Jun 10, 2022Updated 4 years ago
- This repository helps figuring out the best univariate linear model☆16Dec 14, 2017Updated 8 years ago
- ☆64Sep 21, 2016Updated 10 years ago
- ☆21May 14, 2026Updated 5 months ago
- Docker container for bioinformatics tools and pipelines☆15Oct 11, 2024Updated 2 years ago
- Tornado server for tracking samples at NGI Stockholm☆12Oct 19, 2026Updated 2 weeks ago
- ☆25Feb 6, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Feb 11, 2024Updated 2 years ago
- A series of scripts to automate sequence workflows☆18Oct 20, 2026Updated 2 weeks ago
- ☆12Sep 20, 2019Updated 7 years ago
- Code accompanying "Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx"☆11Oct 17, 2022Updated 4 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- This is a Claude Code based set of skills that attempt to generate and implement novel ideas, performing data analysis, conducting simula…☆15Jun 13, 2026Updated 4 months ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆14Apr 14, 2026Updated 6 months ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Jupyter notebooks by Laura Harris☆17Dec 5, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- Fast C code for identifying and removing primers and adapters☆11May 20, 2023Updated 3 years ago
- Tutorials for diffxpy.☆11Nov 1, 2019Updated 7 years ago
- Concordance between variant callers☆17Nov 27, 2014Updated 11 years ago
- this project is content about my bioinformation analysis code .it may have R,Shell,Python.☆20Nov 9, 2023Updated 2 years ago
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 7 years ago
- Scripts for NGS processing☆16Sep 6, 2017Updated 9 years ago