HPC based pipelines for variant calling using GATK
☆17Apr 6, 2020Updated 6 years ago
Alternatives and similar repositories for variant-calling-pipeline
Users that are interested in variant-calling-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 5 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Clone of the Bioconductor repository for the RUVSeq package, see https://bioconductor.org/packages/devel/bioc/html/RUVSeq.html for the of…☆16Nov 22, 2022Updated 3 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Mar 20, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Allele-Specific Expression by Single-Cell RNA Sequencing☆31Oct 15, 2020Updated 5 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 11 months ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 7 months ago
- 用每个窗口的read数作为特征、胎儿浓度作为标签,训练神经网络模型;训练完成的神经网络模型可用于NIPT胎儿浓度的预测☆11Jun 10, 2022Updated 4 years ago
- ☆21May 14, 2026Updated 3 months ago
- ☆64Sep 21, 2016Updated 9 years ago
- Bioinformatics Pipeline☆12Oct 7, 2022Updated 3 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 3 years ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Aug 4, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆25Feb 6, 2025Updated last year
- Docker container for bioinformatics tools and pipelines☆15Oct 11, 2024Updated last year
- ☆12Apr 10, 2021Updated 5 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆13Apr 14, 2026Updated 4 months ago
- A series of scripts to automate sequence workflows☆18Jul 16, 2026Updated 3 weeks ago
- ☆16Feb 11, 2024Updated 2 years ago
- SANEFALCON (Single reAds Nucleosome-basEd FetAL fraCtiON): Calculating the fetal fraction for noninvasive prenatal testing based on genom…☆14Jun 5, 2020Updated 6 years ago
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A tool to annotate human VCF files with PolyPhen2 effect measures☆10Dec 26, 2022Updated 3 years ago
- ☆12Sep 20, 2019Updated 6 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Workshop material for BioC Asia 2019☆13Dec 22, 2021Updated 4 years ago
- Processing scRNA-seq data with kallisto|bustools pipeline☆22Mar 6, 2020Updated 6 years ago
- this project is content about my bioinformation analysis code .it may have R,Shell,Python.☆20Nov 9, 2023Updated 2 years ago
- Imputing dropout events in single-cell RNA-sequencing data☆18Dec 7, 2020Updated 5 years ago
- Jupyter notebooks by Laura Harris☆17Dec 5, 2022Updated 3 years ago
- Statistical Procedures for Agricultural Research☆21Oct 16, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Workflows for germline short variant discovery with GATK4☆144May 7, 2021Updated 5 years ago
- Concordance between variant callers☆17Nov 27, 2014Updated 11 years ago
- PhyloSD: Phylogenomic Subgenome Detection pipeline☆11Jun 24, 2022Updated 4 years ago
- A high-throughput ontology-based pipeline for data integration☆16May 17, 2023Updated 3 years ago
- Design gene specific KASP and CAPS/dCAPS primers for any species☆19Sep 19, 2022Updated 3 years ago
- Scripts for NGS processing☆16Sep 6, 2017Updated 8 years ago
- tips and tricks in genome-wide association studies - a tutorial☆14Jul 25, 2023Updated 3 years ago