ListerLab / pfc_developmentLinks
☆19Updated 3 years ago
Alternatives and similar repositories for pfc_development
Users that are interested in pfc_development are comparing it to the libraries listed below
Sorting:
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆22Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Updated 4 years ago
- ☆48Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- ☆50Updated 6 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆23Updated 2 years ago
- Draw phylogenetic trees of tumor evolution☆87Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Updated 9 months ago
- ☆32Updated 11 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Updated last year
- ☆17Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆54Updated last year
- Methods for decontamination of single cell data☆56Updated 11 months ago
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆19Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆29Updated last year
- ☆31Updated 2 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆87Updated 3 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆13Updated 5 years ago
- SCDC☆46Updated 7 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago
- ☆37Updated 3 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Updated 4 years ago