ListerLab / pfc_development

Related projects ⓘ

Alternatives and complementary repositories for pfc_development

• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆39Updated this week
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆51Updated 2 years ago
• EskelandLab / ShinyArchRUiO
  ☆18Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆55Updated 2 years ago
• GreenleafLab / brainchromatin
  Code used to analyze single cell RNA and ATAC sequencing in developing human brain
  ☆31Updated 2 years ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 2 years ago
• immunogenomics / sceQTL
  Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)
  ☆15Updated last year
• meichendong / SCDC
  SCDC
  ☆42Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆46Updated last year
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆13Updated last year
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆21Updated 5 years ago
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated last year
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆48Updated last week
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆46Updated last month
• JinmiaoChenLab / ezSingleCell2
  ☆37Updated 10 months ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆35Updated last year
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated 10 months ago
• mdozmorov / Brain_genomic_data
  Brain-related -omics data
  ☆24Updated 3 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆27Updated 3 years ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆38Updated last year
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆36Updated 2 weeks ago
• bei-lab / scRNA-AHCA
  Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs
  ☆39Updated 10 months ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆41Updated 9 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆62Updated 3 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆33Updated 5 years ago
• jbergenstrahle / STUtility
  ☆47Updated last year
• mathyslab7 / ROSMAP_snRNAseq_PFC
  ☆26Updated last year
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆40Updated 6 months ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆31Updated 3 years ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆32Updated last year