LincolnSteinLab / oncoGANLinks
A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).
☆30Updated last month
Alternatives and similar repositories for oncoGAN
Users that are interested in oncoGAN are comparing it to the libraries listed below
Sorting:
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 5 months ago
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆35Updated 2 months ago
- ☆87Updated 2 months ago
- Benchmark agents on BioML tasks☆54Updated last month
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆82Updated 2 months ago
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆39Updated last year
- ☆93Updated last month
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆40Updated last week
- ☆30Updated last week
- LLM agents for working with the SRA and associated bioinformatics databases.☆131Updated 2 weeks ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆91Updated this week
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- The Agentic BioML Challenge + AutoBioML framework☆15Updated 4 months ago
- Python toolbox for multi-omics data mapping and analysis☆25Updated 2 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 2 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 6 months ago
- Tutorials for multimodal omics data analysis☆17Updated 7 months ago
- ☆17Updated 11 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Python package to load and query ARCHS4 data☆23Updated 3 months ago
- Explainable AI for Bioinformatics☆126Updated 2 years ago
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆33Updated 4 months ago
- ☆73Updated last year
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆41Updated last year
- ☆30Updated 5 months ago
- ☆10Updated 4 years ago
- A Python-based compendium of GPU-optimized aging clocks.☆109Updated last month
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated last week
- ☆11Updated last year
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆37Updated last year