A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).
☆37Jul 21, 2026Updated this week
Alternatives and similar repositories for oncoGAN
Users that are interested in oncoGAN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Drug Response Prediction and Biomarker Discovery Using Multi-Modal Deep Learning☆14Apr 24, 2024Updated 2 years ago
- Workflow to generate interactive feature selection report for cross-sectional or longitudinal studies☆11Apr 3, 2026Updated 3 months ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- Create cell sentences from sequencing data☆23Aug 12, 2024Updated last year
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Apr 30, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for analyses in the Griffin manuscript☆12Dec 14, 2022Updated 3 years ago
- An R package for extracting mutational signatures from vcf files☆11Feb 13, 2025Updated last year
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 10 months ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆20Updated this week
- Blog page for the Genomics x AI community☆15Updated this week
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- ☆26Dec 18, 2024Updated last year
- Official Pytorch implementation of "OmniMRI: A Unified Vision–Language Foundation Model for Generalist MRI Interpretation"☆16Aug 26, 2025Updated 10 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- v2.x of the microassembly based somatic variant caller☆29Jun 30, 2026Updated 3 weeks ago
- deconvolution for RNAseq and bisulfite sequencing☆12Aug 17, 2020Updated 5 years ago
- tools and notes for long reads analysis☆24Mar 31, 2025Updated last year
- ☆16Jun 12, 2025Updated last year
- Command line tool for Wave containers provisioning service☆19Jul 14, 2026Updated last week
- Official code for "Improving Self-supervised Learning with Hardness-aware Dynamic Curriculum Learning: An Application to Digital Patholog…☆17Oct 15, 2021Updated 4 years ago
- A straightforward and complete next-generation sequencing read simulator☆22Feb 18, 2024Updated 2 years ago
- ☆15Aug 17, 2023Updated 2 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Jul 12, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆35Apr 9, 2026Updated 3 months ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 6 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 10 months ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆14May 16, 2026Updated 2 months ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- UrFound: Towards Universal Retinal Foundation Models via Knowledge-Guided Masked Modeling☆25Dec 28, 2025Updated 6 months ago
- PaNeV: an R package for a pathway-based network visualization☆10Aug 25, 2025Updated 11 months ago
- Codes and Data for FFPEsig manuscript☆17Jan 17, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- COntrastive Biomarker Representation Alignment (COBRA) [CVPR25]☆22Oct 1, 2025Updated 9 months ago
- ☆19Updated this week
- ☆13Apr 10, 2026Updated 3 months ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15May 14, 2025Updated last year
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Visual foundation model enabling rapid, accurate detection of brain tumor infiltration during surgery☆36Jan 19, 2026Updated 6 months ago