LincolnSteinLab / oncoGANLinks
A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).
☆28Updated this week
Alternatives and similar repositories for oncoGAN
Users that are interested in oncoGAN are comparing it to the libraries listed below
Sorting:
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 3 months ago
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆35Updated last month
- ☆77Updated last week
- ☆84Updated 2 weeks ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆77Updated 3 weeks ago
- The Agentic BioML Challenge + AutoBioML framework☆14Updated 2 months ago
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆38Updated last year
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆50Updated 3 weeks ago
- Biological Network Integration using Convolutions☆62Updated last year
- ☆124Updated 4 months ago
- CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer☆22Updated last month
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆37Updated this week
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Updated 2 years ago
- Code space for 'Evaluation of large language models for discovery of gene set function'☆36Updated 8 months ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆191Updated 2 months ago
- The light frontend for BioChatter, in pure Python☆54Updated last month
- BioLearns: Computational Biology and Bioinformatics Toolbox in Python☆12Updated 2 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Explainable AI for Bioinformatics☆124Updated 2 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆73Updated 5 months ago
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆37Updated last year
- Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.☆65Updated last week
- ☆11Updated 10 months ago
- LLM agents for working with the SRA and associated bioinformatics databases.☆116Updated last month
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆32Updated 6 years ago
- Python Client Package for WikiPathways☆20Updated 3 months ago
- ☆27Updated 4 months ago
- A deep-learning framework for multi-omics integration☆27Updated 2 years ago
- Create cell sentences from sequencing data☆23Updated last year
- Python toolbox for multi-omics data mapping and analysis☆24Updated 2 years ago