TranslationalBioinformaticsUnit / TransformersInGenomicsPapersLinks
A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and genomics. This repository compiles key academic papers that demonstrate the application of transformer-based models in genomics, providing users with a valuable resource to navigate this rapidly evolving field.
☆42Updated last year
Alternatives and similar repositories for TransformersInGenomicsPapers
Users that are interested in TransformersInGenomicsPapers are comparing it to the libraries listed below
Sorting:
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆31Updated last year
- Computational Optimization of DNA Activity (CODA)☆67Updated 10 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆123Updated this week
- Knowledge-primed neural networks☆38Updated 2 years ago
- ☆88Updated 2 months ago
- ☆85Updated 3 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆82Updated last year
- ☆72Updated 2 months ago
- ☆100Updated 3 months ago
- Predictor of TCR-epitope interactions☆34Updated 4 months ago
- For fine-tuning Enformer using paired WGS & gene expression data☆26Updated 5 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Updated last year
- A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution☆42Updated 10 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆100Updated 11 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Updated 2 years ago
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆41Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 2 weeks ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Updated last year
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆77Updated 11 months ago
- ☆34Updated last year
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Explainable AI for Bioinformatics☆127Updated 2 years ago
- code to run sei and obtain sei and sequence class predictions☆111Updated 3 years ago
- Functional Embedding of Gene Signatures☆48Updated last year
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆58Updated 8 months ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆185Updated last month
- Scripts and instructions to apply RiboTIE on Ribo-seq data☆19Updated 6 months ago
- ☆38Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆74Updated last week