A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and genomics. This repository compiles key academic papers that demonstrate the application of transformer-based models in genomics, providing users with a valuable resource to navigate this rapidly evolving field.
☆42Dec 18, 2024Updated last year
Alternatives and similar repositories for TransformersInGenomicsPapers
Users that are interested in TransformersInGenomicsPapers are comparing it to the libraries listed below
Sorting:
- pytorch dataloaders for single-cell perturbation data☆43Updated this week
- GEFormer is a genome-wide prediction model for genotype-environment interactions based on a deep learning approach designed to predict ma…☆14Jan 15, 2026Updated last month
- scMODAL: A general deep learning framework for single-cell Multi-Omics Data Alignment with feature Links☆21Jun 10, 2025Updated 8 months ago
- A DRAFT, early stage book on snakemake.☆22Nov 1, 2023Updated 2 years ago
- ☆20Dec 22, 2024Updated last year
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- Workflow Description Language (WDL) scripts for common vg workflows☆23Dec 15, 2025Updated 2 months ago
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Feb 5, 2024Updated 2 years ago
- Code for AlphaFold Distillation for Protein Design☆25Sep 18, 2025Updated 5 months ago
- GA4GH cryptographic tools☆19Oct 11, 2025Updated 4 months ago
- Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics☆29Sep 9, 2024Updated last year
- Evaluation of phasing performance☆23Mar 6, 2018Updated 7 years ago
- A deep-learning framework for multi-omics integration☆32Jul 6, 2023Updated 2 years ago
- fastest GTF/GFF-to-BED converter chilling around☆32Jan 20, 2026Updated last month
- Providing interactions between drugs and genes sourced from a variety of publications and knowledgebases☆36Jan 13, 2026Updated last month
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- ☆11Updated this week
- ☆13Feb 8, 2019Updated 7 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11May 8, 2024Updated last year
- ☆10Aug 5, 2021Updated 4 years ago
- Drug Response Prediction and Biomarker Discovery Using Multi-Modal Deep Learning☆14Apr 24, 2024Updated last year
- Ressources for Boinformatics Trainings☆12Nov 20, 2023Updated 2 years ago
- Fine-tuning of ChemBERTA LLMs to predict molecules' HIV inhibition replication.☆35Sep 15, 2023Updated 2 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Jun 14, 2022Updated 3 years ago
- Optimization solvers in pure Python: LP, MILP, SAT, constraint programming, graph and metaheuristics. No dependencies. Solvor all your op…☆25Feb 1, 2026Updated 3 weeks ago
- Python library & CLI to create, view and edit PFB files☆12Feb 19, 2026Updated last week
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Feb 19, 2026Updated last week
- predicting expression effects of human genome variants ab initio from sequence☆133Jan 28, 2025Updated last year
- Command line utility for working with next-generation sequencing files.☆38Jun 24, 2025Updated 8 months ago
- Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), ad…☆33Jul 12, 2020Updated 5 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Apr 25, 2019Updated 6 years ago
- ☆41Dec 4, 2023Updated 2 years ago
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆20Dec 9, 2025Updated 2 months ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 9 years ago
- A CNN model to identify MEIs in WGS☆12Mar 4, 2025Updated 11 months ago
- ☆12Jun 16, 2025Updated 8 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- Draw pan- and core-genome curves from proteinortho output☆10Oct 26, 2023Updated 2 years ago
- ☆10Jan 19, 2019Updated 7 years ago