science-machine / biomlbenchLinks
Benchmark agents on BioML tasks
☆61Updated 3 months ago
Alternatives and similar repositories for biomlbench
Users that are interested in biomlbench are comparing it to the libraries listed below
Sorting:
- A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).☆34Updated last week
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆58Updated 7 months ago
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆38Updated 4 months ago
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆39Updated last year
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆42Updated last year
- Interpretable splicing model☆22Updated 2 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated 3 weeks ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆24Updated 6 months ago
- ☆97Updated last month
- Bencharking pipeline for evaluating Transcriptomic representations for perturbation tasks☆11Updated last year
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆51Updated 4 months ago
- ☆19Updated 2 years ago
- Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks☆100Updated 2 months ago
- The Agentic BioML Challenge + AutoBioML framework☆18Updated 6 months ago
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆33Updated 6 months ago
- Biological Network Integration using Convolutions☆63Updated last year
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆22Updated 2 weeks ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆38Updated 9 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆85Updated 2 weeks ago
- ☆76Updated last year
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆76Updated 9 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆92Updated 5 months ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆17Updated 4 months ago
- ☆30Updated 2 weeks ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Multi-Scale Integrated Cell☆36Updated 3 years ago
- Arnie-based DegScore tool.☆27Updated 3 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆97Updated 6 months ago