Benchmark agents on BioML tasks
☆77Sep 14, 2025Updated last year
Alternatives and similar repositories for biomlbench
Users that are interested in biomlbench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17Jan 30, 2026Updated 7 months ago
- The Agentic BioML Challenge + AutoBioML framework☆18Jun 3, 2025Updated last year
- labbench2☆63May 7, 2026Updated 4 months ago
- A harness for spatial biology☆213Updated this week
- A holistic framework for advancing LLMs as data science agents☆61May 19, 2026Updated 4 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python toolbox for multi-omics data mapping and analysis☆29Apr 13, 2023Updated 3 years ago
- Example chats from running BioMCP for demonstrations☆17Jun 20, 2025Updated last year
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 3 years ago
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive…☆18Aug 7, 2024Updated 2 years ago
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Apr 5, 2023Updated 3 years ago
- Multimodal foundation model predicting transcriptome-wide virtual spatial transcriptomics from histology.☆57Sep 4, 2026Updated 2 weeks ago
- Natural language interface to NCI Imaging Data Commons☆42Sep 3, 2026Updated 2 weeks ago
- Benchmark for LLM-based Agents in Computational Biology☆145Oct 6, 2025Updated 11 months ago
- A virtual lab of LLM agents for science research☆737Dec 31, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Benchmark for evaluating LLM agents in bioinformatics☆34Aug 11, 2026Updated last month
- ☆22Jul 18, 2024Updated 2 years ago
- llm agent for drug discovery☆45Feb 24, 2026Updated 7 months ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆46May 28, 2026Updated 3 months ago
- A napari plugin for itk-elastix☆43Feb 16, 2026Updated 7 months ago
- A Reproducible Untargeted Metabolomics Data Processing Pipeline☆11Mar 18, 2021Updated 5 years ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated 2 years ago
- A language agent gym with challenging scientific tasks☆281Sep 16, 2026Updated last week
- This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.☆21Aug 13, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Medea: An AI agent for therapeutic reasoning across biological contexts☆131Jul 17, 2026Updated 2 months ago
- Neural networks to model BCR affinity maturation☆19May 11, 2026Updated 4 months ago
- Biomni: a general-purpose biomedical AI agent☆3,909Updated this week
- Official repository for 'Risk of Bias in Chest Radiography Deep Learning Foundation Models'☆13Sep 27, 2023Updated 2 years ago
- deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignme…☆12Aug 12, 2026Updated last month
- ☆14Jun 23, 2025Updated last year
- ☆19Mar 30, 2025Updated last year
- ☆12Jun 29, 2021Updated 5 years ago
- ☆20May 25, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Collection of mRNA benchmarks☆53Sep 5, 2026Updated 2 weeks ago
- Democratizing AI scientists with ToolUniverse☆1,701Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆26Jun 24, 2026Updated 2 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆128Jul 6, 2025Updated last year
- Automated Capability Discovery via Foundation Model Self-Exploration☆68Apr 16, 2026Updated 5 months ago
- ☆20May 5, 2023Updated 3 years ago
- Protein prediction models implemented with Modal☆34Aug 12, 2026Updated last month