amulya-prasad / XplainMDLinks
☆42Updated 3 months ago
Alternatives and similar repositories for XplainMD
Users that are interested in XplainMD are comparing it to the libraries listed below
Sorting:
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆141Updated this week
- BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model☆267Updated last month
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆283Updated last month
- Explainable AI for Bioinformatics☆125Updated 2 years ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆71Updated 2 weeks ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 2 months ago
- Backend library for conversational AI in biomedicine☆172Updated last month
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆207Updated last month
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆186Updated last month
- ☆82Updated this week
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆269Updated this week
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆36Updated last year
- Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NI…☆74Updated 2 months ago
- CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 speci…☆168Updated 2 weeks ago
- LLM agents for working with the SRA and associated bioinformatics databases.☆110Updated 3 weeks ago
- Open-Source package for segmentation and analysis of gel electrophoresis images using machine learning. Both a python framework for trai…☆69Updated 3 weeks ago
- ProCyon: A multimodal foundation model for protein phenotypes☆39Updated 5 months ago
- A Python-based compendium of GPU-optimized aging clocks.☆100Updated 2 months ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆27Updated 8 months ago
- Plasmid.ai is the largest open-source toolkit for developing plasmid foundation models.☆12Updated 6 months ago
- ☆92Updated last month
- Automated machine learning for analyzing, interpreting, and designing biological sequences☆171Updated 2 years ago
- A biotechnologist's guide to evaluating machine learning algorithms, with practical Python examples☆21Updated 6 months ago
- Machine learning tools for biomarker analysis☆65Updated last week
- ☆124Updated 4 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆79Updated last week
- Comprehensive Python client for the Uniprot REST API☆50Updated last month
- De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments☆93Updated last month
- ☆11Updated 9 months ago
- ☆62Updated last week