LBGC-CFB / SPiP
Splicing Prediction Pipeline
☆13Updated last year
Related projects: ⓘ
- ☆35Updated 4 months ago
- Toolkit for calling structural variants using short or long reads☆91Updated last week
- Structural Variant Index☆66Updated 5 months ago
- Data and information about the Polaris study☆52Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆94Updated 2 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆60Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆74Updated 7 months ago
- Fast and accurate coordinate conversion between assemblies☆106Updated 2 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆75Updated last year
- ☆38Updated last week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆45Updated 4 years ago
- python plotly Circos from VCF☆32Updated 3 months ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆21Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆135Updated 3 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆100Updated 3 years ago
- CN-Learn☆29Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆106Updated 7 months ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆29Updated 6 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆64Updated 2 weeks ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆24Updated 8 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆44Updated this week
- ☆48Updated 3 years ago
- Software for performing UDiTaS sequencing analysis.☆13Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated 10 months ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 7 years ago
- ☆49Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆100Updated this week
- ☆79Updated 4 months ago