LBGC-CFB / SPiPLinks
Splicing Prediction Pipeline
☆15Updated 2 years ago
Alternatives and similar repositories for SPiP
Users that are interested in SPiP are comparing it to the libraries listed below
Sorting:
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆82Updated 2 years ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- Variant calling tool for long-read sequencing data☆112Updated 7 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆126Updated 2 months ago
- Fast and accurate coordinate conversion between assemblies☆116Updated last week
- SV detection tool for nanopore sequence reads☆94Updated 6 months ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆113Updated 6 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- Somatic structural variant caller for long-read data☆80Updated 3 weeks ago
- A tool for somatic structural variant calling using long reads☆147Updated 2 weeks ago
- Toolkit for calling structural variants using short or long reads☆109Updated 3 weeks ago
- A complete diploid human genome☆134Updated 3 weeks ago
- Pangenome-based genome inference☆148Updated 2 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- ☆50Updated 3 weeks ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- ☆119Updated 2 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated this week
- A tool for profiling long STRs from short reads☆100Updated 4 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- ☆76Updated 9 months ago
- Copy number caller for long read data including SNV utilization☆67Updated 6 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- ☆104Updated this week
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- python plotly Circos from VCF☆40Updated last year
- Data and information about the Polaris study☆53Updated 5 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago