emmanuelparadis / ape
Analysis of Phylogenetics and Evolution
☆66Updated last month
Alternatives and similar repositories for ape
Users that are interested in ape are comparing it to the libraries listed below
Sorting:
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆92Updated 3 weeks ago
- diversity estimation under ecological networks☆83Updated 3 weeks ago
- Species richness with high diversity☆68Updated 3 weeks ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data☆34Updated 2 months ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated last month
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆70Updated 11 months ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆56Updated 9 months ago
- Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…☆47Updated 3 years ago
- [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data☆71Updated this week
- babette is an R package to work with BEAST2☆45Updated 2 weeks ago
- Linear Decomposition Model☆24Updated last year
- Population and Evolutionary Genetics Analysis System☆28Updated 2 months ago
- Seamless Integration of BLAST Sequence Searches in R☆31Updated last year
- the hierfstat package☆24Updated 5 months ago
- Meta package for processing and visualizing tree with data☆27Updated 3 years ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆63Updated 11 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.☆149Updated last year
- Miscellaneous functions for metagenomic analysis.☆50Updated last month
- See https://biometris.github.io/statgenGWAS for a full description☆14Updated this week
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆24Updated 9 months ago
- ☆19Updated last year
- fastqcr: Quality Control of Sequencing Data☆73Updated last year
- Source files for online resources of Bioinformatics of Infectious Diseases course☆22Updated 4 years ago
- Genome wide orthology inference and dNdS estimation☆90Updated last year
- R tools for integrating phylogenies and ecology☆35Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆36Updated 9 years ago
- A textbook for phylogenetic comparative methods.☆43Updated 5 years ago