Analysis of Phylogenetics and Evolution
☆74Jun 17, 2026Updated 2 weeks ago
Alternatives and similar repositories for ape
Users that are interested in ape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Population and Evolutionary Genetics Analysis System☆29Apr 4, 2026Updated 3 months ago
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 2 years ago
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆17Jun 19, 2026Updated 2 weeks ago
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆86Updated this week
- ☆233Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- babette is an R package to work with BEAST2☆46Mar 13, 2026Updated 3 months ago
- Phylogenetic profiling with orthology data☆13May 11, 2026Updated last month
- ☆10Dec 20, 2022Updated 3 years ago
- Biogeographic regionalization and spatial conservation☆20Jul 14, 2025Updated 11 months ago
- Phylogenetic analysis in R☆216Jun 22, 2026Updated 2 weeks ago
- phylogenetic networks using ggplot2 and ggtree☆12Jun 11, 2026Updated 3 weeks ago
- Bayesian Evolutionary Analysis by Sampling Trees☆277Mar 27, 2026Updated 3 months ago
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- Base Classes and Functions for Phylogenetic Tree Input and Output☆104Apr 30, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for cladistic disparity☆14Feb 5, 2026Updated 5 months ago
- ☆16Apr 11, 2026Updated 2 months ago
- R We There Yet?☆33Mar 27, 2025Updated last year
- Computing resources for peace of mind☆13Feb 23, 2023Updated 3 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 7 months ago
- ☆12Feb 9, 2025Updated last year
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆90Jun 22, 2026Updated last week
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆30Mar 5, 2018Updated 8 years ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆263Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆253Jun 16, 2026Updated 2 weeks ago
- A multi-algorithmic framework for phylogenetic inference☆14Updated this week
- Racmacs R package for performing antigenic cartography☆24Jun 27, 2024Updated 2 years ago
- R package for multiple sequence alignment☆26Jun 8, 2026Updated 3 weeks ago
- spruceup☆25Aug 15, 2025Updated 10 months ago
- ☆11May 10, 2025Updated last year
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆251Jun 25, 2026Updated last week
- Explore spaces of phylogenetic trees☆29Aug 28, 2025Updated 10 months ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆17Sep 5, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Efficient phylogenetic tree inference for massive taxonomic datasets☆145Apr 6, 2025Updated last year
- Phylogenetic trees in Julia☆21Sep 1, 2021Updated 4 years ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆17Oct 11, 2021Updated 4 years ago
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 10 years ago
- download files in R using wget -c☆16Aug 20, 2025Updated 10 months ago
- Searching large collections of sequencing data with genome-scale queries☆19Updated this week
- The MafFilter genome alignment processor☆19Apr 10, 2026Updated 2 months ago