Analysis of Phylogenetics and Evolution
☆74Sep 15, 2026Updated 3 weeks ago
Alternatives and similar repositories for ape
Users that are interested in ape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Population and Evolutionary Genetics Analysis System☆29Sep 11, 2026Updated last month
- Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language☆90Updated this week
- R package to calculate the similarity of two trees based on the number of shared four-taxon subtrees (or splits)☆18Oct 5, 2026Updated last week
- Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees☆12Sep 6, 2023Updated 3 years ago
- ☆234Sep 15, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- babette is an R package to work with BEAST2☆46Jul 16, 2026Updated 2 months ago
- Phylogenetic profiling with orthology data☆14Updated this week
- R package for phylodynamics☆16Updated this week
- Phylogenetic analysis in R☆216Sep 23, 2026Updated 3 weeks ago
- ☆11Dec 20, 2022Updated 3 years ago
- Biogeographic regionalization and spatial conservation☆20Jul 14, 2025Updated last year
- phylogenetic networks using ggplot2 and ggtree☆12Jun 11, 2026Updated 4 months ago
- Bayesian Evolutionary Analysis by Sampling Trees☆285Jul 13, 2026Updated 3 months ago
- Base Classes and Functions for Phylogenetic Tree Input and Output☆103Sep 21, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- Evolutionary Sparse Learning - Paired Species Contrast☆17Jul 22, 2026Updated 2 months ago
- ☆16Apr 11, 2026Updated 6 months ago
- Computing resources for peace of mind☆13Feb 23, 2023Updated 3 years ago
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Nov 18, 2025Updated 10 months ago
- ☆13Jul 20, 2026Updated 2 months ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆95Oct 5, 2026Updated last week
- R We There Yet?☆33Mar 27, 2025Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Explore spaces of phylogenetic trees☆30Aug 28, 2025Updated last year
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆257Updated this week
- R package for multiple sequence alignment☆26Aug 27, 2026Updated last month
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆258Jun 25, 2026Updated 3 months ago
- spruceup☆25Aug 15, 2025Updated last year
- Racmacs R package for performing antigenic cartography☆24Jul 8, 2026Updated 3 months ago
- A multi-algorithmic framework for phylogenetic inference☆14Updated this week
- ☆11May 10, 2025Updated last year
- Python tool to reduce size and redundancy of phylogenetic datasets☆56Dec 5, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Efficient phylogenetic tree inference for massive taxonomic datasets☆148Apr 6, 2025Updated last year
- Phylogenetic trees in Julia☆21Sep 29, 2026Updated 2 weeks ago
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 11 years ago
- download files in R using wget -c☆16Aug 20, 2025Updated last year
- general purpose library for evaluating the likelihood of sequence evolution on trees☆147Oct 7, 2026Updated last week
- R package for cladistic disparity☆15Feb 5, 2026Updated 8 months ago
- The MafFilter genome alignment processor☆19Aug 27, 2026Updated last month