emmanuelparadis / ape
Analysis of Phylogenetics and Evolution
☆64Updated this week
Alternatives and similar repositories for ape:
Users that are interested in ape are comparing it to the libraries listed below
- A Toolbox for Manipulating Biological Sequences in R☆22Updated 2 years ago
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆91Updated 4 months ago
- babette is an R package to work with BEAST2☆45Updated last month
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆69Updated 10 months ago
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆56Updated 7 months ago
- diversity estimation under ecological networks☆83Updated last year
- See https://biometris.github.io/statgenGWAS for a full description☆14Updated 2 weeks ago
- R tools for integrating phylogenies and ecology☆35Updated last year
- Population and Evolutionary Genetics Analysis System☆29Updated 2 weeks ago
- Miscellaneous functions for metagenomic analysis.☆49Updated last month
- RADseq Data Exploration, Manipulation and Visualization using R☆59Updated 4 months ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆35Updated 9 years ago
- Species richness with high diversity☆68Updated last year
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆17Updated this week
- the hierfstat package☆25Updated 4 months ago
- Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…☆46Updated 3 years ago
- gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data☆30Updated last month
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Base Classes and Functions for Phylogenetic Tree Input and Output☆102Updated 4 months ago
- Count Regression for Correlated Observations with the Beta-binomial☆106Updated 6 months ago
- Speedy versions of phyloseq functions☆47Updated 11 months ago
- Pairwise multilevel comparison using adonis☆72Updated last year
- LoD calculator☆20Updated 5 years ago
- Meta package for processing and visualizing tree with data☆27Updated 3 years ago
- Seamless Integration of BLAST Sequence Searches in R☆31Updated last year
- Linear Decomposition Model☆24Updated last year
- ☆19Updated last year
- An automated pipeline for retrieving orthologous DNA sequences from GenBank in R☆23Updated 8 months ago
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆61Updated 9 months ago
- ☆52Updated 3 years ago