Alternatives and similar repositories for ape

Users that are interested in ape are comparing it to the libraries listed below

• adw96 / breakaway
  Species richness with high diversity
  ☆67Updated 3 weeks ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆84Updated last month
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆23Updated 2 years ago
• YuLab-SMU / treeio
  Base Classes and Functions for Phylogenetic Tree Input and Output
  ☆103Updated 4 months ago
• statdivlab / corncob
  Count Regression for Correlated Observations with the Beta-binomial
  ☆107Updated 5 months ago
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆94Updated 2 weeks ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆71Updated last week
• sprouffske / growthcurver
  Growthcurver is an R package that fits growth curve data to a standard form of the logistic equation common in ecology and evolution whos…
  ☆48Updated 3 years ago
• mikeblazanin / gcplyr
  gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data
  ☆36Updated last month
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆57Updated last year
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• KarstensLab / microshades
  This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…
  ☆69Updated last year
• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆59Updated last month
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆38Updated 9 years ago
• YuLab-SMU / treedataverse
  Meta package for processing and visualizing tree with data
  ☆28Updated 3 years ago
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆24Updated 2 years ago
• YuLab-SMU / treedata-book
  a complete reference book for treeio, tidytree and ggtree packages
  ☆104Updated 3 years ago
• pmartinezarbizu / pairwiseAdonis
  Pairwise multilevel comparison using adonis
  ☆78Updated 2 years ago
• lukejharmon / pcm
  A textbook for phylogenetic comparative methods.
  ☆44Updated 5 years ago
• lamho86 / phylolm
  ☆37Updated 9 months ago
• ropensci / babette
  babette is an R package to work with BEAST2
  ☆46Updated last week
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆29Updated 5 months ago
• grunwaldlab / metacoder
  Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
  ☆143Updated 6 months ago
• ArtPoon / BioID
  Source files for online resources of Bioinformatics of Infectious Diseases course
  ☆22Updated 5 years ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆150Updated 2 years ago
• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆51Updated this week
• jgx65 / hierfstat
  the hierfstat package
  ☆25Updated 9 months ago
• tpq / propr
  [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
  ☆72Updated last month
• skembel / picante
  R tools for integrating phylogenies and ecology
  ☆35Updated last year
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆75Updated 2 years ago