Base Classes and Functions for Phylogenetic Tree Input and Output
☆104Apr 30, 2026Updated last month
Alternatives and similar repositories for treeio
Users that are interested in treeio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Tidy Tool for Phylogenetic Tree Data Manipulation☆60Jan 8, 2026Updated 5 months ago
- Visualization and annotation of phylogenetic trees☆926Apr 29, 2026Updated last month
- download files in R using wget -c☆16Aug 20, 2025Updated 9 months ago
- An R package that provides a base S4 class for comparative methods, incorporating one or more trees and trait data☆20Jan 30, 2024Updated 2 years ago
- Visualization tool for genetic reassortment☆21Apr 29, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a complete reference book for treeio, tidytree and ggtree packages☆103Jul 13, 2022Updated 3 years ago
- Visualizing publication-quality multiple sequence alignment using ggplot2☆217Apr 29, 2026Updated last month
- Phylogenetic analysis in R☆214Updated this week
- Taxonomy-aware DNA sequence processing toolkit☆34Jun 1, 2026Updated last week
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆98Updated this week
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago
- ☆20Jun 15, 2024Updated last year
- Phylocom R interface☆15Apr 21, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Analysis of Phylogenetics and Evolution☆74Jun 2, 2026Updated last week
- R interface to GenBank/GenPept files☆14Jan 12, 2021Updated 5 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Jan 9, 2019Updated 7 years ago
- Manage cached files☆23Jan 19, 2025Updated last year
- Bayesian Evolutionary Analysis by Sampling Trees☆275Mar 27, 2026Updated 2 months ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Repository for discussion lectures (MCBL121, Winter 2024), up until I decided that google slides was way easier.☆25Dec 17, 2024Updated last year
- ➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2☆591Jan 13, 2026Updated 4 months ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Drawing 'dendrogram' using 'ggtree'☆13Apr 29, 2026Updated last month
- Homepage for YuLab-SMU☆14May 25, 2026Updated 2 weeks ago
- ☆26Aug 25, 2021Updated 4 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated last month
- shell tools for processing phylogenetic trees☆119Aug 30, 2022Updated 3 years ago
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11May 3, 2024Updated 2 years ago
- Visualization of Functional Enrichment Result☆258Apr 29, 2026Updated last month
- phylogenetics tools for linux (and other mostly posix compliant) computers☆124Apr 18, 2026Updated last month
- ☆15Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆86May 20, 2026Updated 2 weeks ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆262Updated this week
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- A very simple BLAST filtering pipeline☆19Mar 28, 2014Updated 12 years ago
- MeSH Enrichment and Semantic analyses☆12Apr 29, 2026Updated last month
- RAxML Next Generation: faster, easier-to-use and more flexible☆466May 29, 2026Updated last week
- A Full Featured Multiple Sequence Alignment Editor.☆26May 21, 2018Updated 8 years ago