timeu / PyGWAS
☆24Updated 6 years ago
Alternatives and similar repositories for PyGWAS:
Users that are interested in PyGWAS are comparing it to the libraries listed below
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ☆24Updated 8 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆79Updated 11 months ago
- for visual evaluation of read support for structural variation☆51Updated 7 months ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 2 years ago
- A software for calculating telomere length☆67Updated 6 years ago
- PHAST☆71Updated last month
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- Support Vector Structural Variation Genotyper☆58Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- ☆33Updated 4 months ago
- The script presents a simple way to visualize features on human chromosome ideograms☆40Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- toolkit to process gtf files☆16Updated 3 years ago
- ThermoAlign: software for automated primer design☆25Updated 6 years ago
- Galaxy RNA workbench☆39Updated 4 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 3 years ago
- RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data☆23Updated 8 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆30Updated last year
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆21Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆40Updated 4 months ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- Modify existing reference fasta and gff3/gtf files to include a new sequence☆30Updated 2 weeks ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago