Lectures on Genome Wide Association Studies (GWAS) using Python, Limix and Jupyter Noteboos
☆32Nov 20, 2020Updated 5 years ago
Alternatives and similar repositories for gwas-lecture
Users that are interested in gwas-lecture are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24Dec 10, 2018Updated 7 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 6 months ago
- Cookiecutter for snakemake slurm profile☆16Jul 22, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆11Mar 14, 2026Updated 4 months ago
- Scripts to convert between file formats for various analyses☆16May 10, 2025Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- https://filippob.github.io/introduction_to_gwas/☆22Jun 8, 2026Updated last month
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 2 years ago
- ☆12Sep 28, 2021Updated 4 years ago
- Quality control steps for GWAS☆26Aug 11, 2023Updated 2 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆14Feb 26, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The cattle Genotype-Tissue Expression atlas v1☆29Mar 14, 2023Updated 3 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- ☆20Oct 4, 2023Updated 2 years ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 4 months ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated 2 years ago
- ☆10Feb 25, 2024Updated 2 years ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- A tool to visualize the haplotype pattern and various information in excel.☆24Mar 5, 2025Updated last year
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GWAS analysis process based on EMMAX software☆21Dec 12, 2023Updated 2 years ago
- PLINK reader for Python.☆90May 12, 2025Updated last year
- slurm utility for reporting job statistics☆17Sep 27, 2024Updated last year
- Python API for comprehensive GWAS analysis using GEMMA☆107Sep 6, 2023Updated 2 years ago
- Random stuff for BLUPF90 programs☆17Aug 28, 2023Updated 2 years ago
- Repository☆10Oct 23, 2024Updated last year
- Perform GWAS using the FarmCPU model.☆26Dec 14, 2024Updated last year
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- A python package for the identification of lncRNA from the assembled novel transcripts☆17Oct 28, 2021Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆24Jul 29, 2025Updated 11 months ago
- PyPop: Python for Population Genomics☆25Updated this week
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆23Updated this week
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 11 months ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Jun 18, 2026Updated last month
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆21Apr 9, 2024Updated 2 years ago
- ☆10Apr 10, 2016Updated 10 years ago