Alternatives and similar repositories for Simple-ClinVar

Users that are interested in Simple-ClinVar are comparing it to the libraries listed below

• molgenis / capice
  ☆27Updated 11 months ago
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆65Updated last year
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆42Updated 6 years ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 4 years ago
• drpowell / degust
  An interactive web-tool for RNA-seq analysis
  ☆70Updated 9 months ago
• lfresard / blood_rnaseq_rare_disease_paper
  ☆29Updated 6 years ago
• Clinical-Genomics / fusion-report
  Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…
  ☆28Updated 5 months ago
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆35Updated 5 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 4 months ago
• macarthur-lab / gnomad_browser
  gnomAD browser pre-ASHG 2018
  ☆33Updated 5 years ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆77Updated last month
• carpentries-incubator / workflows-nextflow
  Workflow management with Nextflow and nf-core
  ☆27Updated 10 months ago
• costasilvati / consexpression
  Tool for RNA-Seq analysis.
  ☆39Updated 3 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆36Updated last year
• ShixiangWang / sigflow
  Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
  ☆29Updated last year
• macarthur-lab / igv_utils
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆49Updated 6 years ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆63Updated 5 months ago
• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 7 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆55Updated this week
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆69Updated this week
• mani2012 / BatchQC
  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.
  ☆35Updated 2 years ago
• wyguo / ThreeDRNAseq
  A pipeline for differential expression and differential alternative splicing analysis
  ☆66Updated last year
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆41Updated 2 months ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆38Updated 2 years ago
• MoriarityLab / EditR
  EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence
  ☆32Updated 2 years ago
• dohlee / snakemake-wrappers
  Snakemake wrappers for bioinformatics.
  ☆18Updated 2 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• mskcc / ngs-filters
  Filters for false-positive mutation calls in NGS
  ☆34Updated 6 years ago