CapraLab / cosmisLinks
COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently maps the landscape of 3D mutational constraint on 6.1 amino acid sites covering >80% (16,533) of human proteins.
☆17Updated 2 years ago
Alternatives and similar repositories for cosmis
Users that are interested in cosmis are comparing it to the libraries listed below
Sorting:
- ☆66Updated 5 months ago
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- A method to predict DNA shape features considering farther flanking region.☆33Updated 10 months ago
- Comprehensive Python client for the Uniprot REST API☆50Updated last month
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last month
- A Pure-Python parser of HMMER3 output☆17Updated 9 months ago
- The tRNA adaptation index☆18Updated 3 months ago
- Deep learning embedding for nucleotide sequences☆19Updated 4 months ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 7 months ago
- Python port of the R Bioconductor `seqLogo` package☆33Updated last year
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆47Updated last week
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆59Updated this week
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last week
- ☆76Updated last year
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated last month
- Examples for gget (https://github.com/pachterlab/gget).☆38Updated 2 months ago
- Associated code for EvoWeaver publication☆15Updated 2 months ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- software for the analysis and visualization of deep mutational scanning data☆35Updated 2 years ago
- Python package to plot sequence logos☆29Updated last year
- Predicting gene expression levels from genomic sequences☆53Updated 5 years ago
- Multi-class signal peptide prediction and structure decoding model.☆89Updated 6 months ago
- ☆11Updated 2 years ago
- A guide to running MaxQuant in Linux☆33Updated 5 years ago
- Tool for deep mutational scanning experiments.☆53Updated 4 months ago
- ☆38Updated last year
- plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style☆16Updated last month