Alternatives and similar repositories for SQuaD-MDS-and-FItSNE-hybrid

Users that are interested in SQuaD-MDS-and-FItSNE-hybrid are comparing it to the libraries listed below

• Jinke-Liu / Distance-of-distance-tSNE
  ☆10Updated last year
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 10 months ago
• canzarlab / JVis-learn
  ☆20Updated 4 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• fanzheng10 / HiDeF
  HiDeF (Hierarchical community Decoding Framework)
  ☆14Updated last year
• berenslab / contrastive-ne
  Contrastive neighbor embeddings
  ☆54Updated 3 months ago
• solevillar / scGeneFit-python
  Python code for genetic marker selection using linear programming
  ☆42Updated last year
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆35Updated 2 months ago
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆33Updated 4 months ago
• sciai-lab / cl-tsne-umap
  ☆33Updated 3 weeks ago
• theislab / campa
  Conditional Autoencoders for Multiplexed Pixel Analysis
  ☆15Updated 2 years ago
• caravagnalab / congas
  A set of Pyro models and functions to infer CNA from scRNA-seq data
  ☆11Updated last year
• andrewcharlesjones / spatial-alignment
  Alignment of spatial genomics data using deep Gaussian processes
  ☆26Updated 2 years ago
• rongstat / meta-visualization
  A spectral method for assessing and combining multiple data visualizations
  ☆50Updated last year
• feiyoung / PRECAST
  an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…
  ☆10Updated last year
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆53Updated 8 months ago
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆21Updated 3 months ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated 2 years ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated 2 years ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 5 months ago
• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• const-ae / transformGamPoi-Paper
  ☆27Updated last year
• daniel-munro / imageCCA
  Code for preparing and running the imageCCA method.
  ☆20Updated 7 years ago
• berenslab / ne-spectrum
  Attraction-Repulsion Spectrum in Neighbor Embeddings
  ☆30Updated 2 years ago
• cleary-lab / CISI
  code for composite in situ imaging (cisi) analysis
  ☆13Updated 4 years ago
• Andrew-Draganov / GiDR-DUN
  A simple implementation of UMAP, TSNE and GDR across frameworks and libraries
  ☆13Updated 5 months ago
• RabadanLab / randomly
  A Library for Denoising Single-Cell Data with Random Matrix Theory
  ☆37Updated last year
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆58Updated last year
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 7 months ago
• CamaraLab / CAJAL
  A Python package using Gromov-Wasserstein distance to compare cell shapes
  ☆17Updated 3 months ago