InfectionMedicineProteomics / BINNLinks
Generating biologically informed neural networks
☆53Updated 11 months ago
Alternatives and similar repositories for BINN
Users that are interested in BINN are comparing it to the libraries listed below
Sorting:
- CMap Notebooks for LINCS 2020 Workshop☆49Updated 4 years ago
- ☆66Updated 2 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆77Updated 10 months ago
- ☆67Updated 5 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 3 years ago
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆17Updated last year
- Comprehensive suite for evaluating perturbation prediction models☆113Updated 3 weeks ago
- Functional Embedding of Gene Signatures☆48Updated last year
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆217Updated 4 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆52Updated 4 months ago
- ☆70Updated last week
- CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer☆29Updated 3 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆125Updated last year
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆59Updated 5 months ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 5 years ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆138Updated 11 months ago
- ☆100Updated 3 months ago
- Biological Network Integration using Convolutions☆63Updated last year
- MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations☆89Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236☆47Updated 4 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆57Updated 7 months ago
- Python package to load and query ARCHS4 data☆24Updated 5 months ago
- Images and other data from the JUMP Cell Painting Consortium☆180Updated 2 weeks ago
- ☆134Updated 9 months ago
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆19Updated 6 months ago
- repository containing analysis scripts and auxiliary files☆36Updated 5 years ago
- Diffusion model for gene regulatory network inference.☆24Updated 5 months ago
- A Deep Learning based Efficacy Prediction System for drug discovery☆73Updated 3 years ago
- ☆89Updated last year