InfectionMedicineProteomics / BINNLinks
Generating biologically informed neural networks
☆48Updated 5 months ago
Alternatives and similar repositories for BINN
Users that are interested in BINN are comparing it to the libraries listed below
Sorting:
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 3 years ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆72Updated 4 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆49Updated 5 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer☆21Updated last week
- repository containing analysis scripts and auxiliary files☆34Updated 5 years ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆34Updated last week
- Python package to load and query ARCHS4 data☆23Updated 4 months ago
- Diffusion model for gene regulatory network inference.☆21Updated last week
- Multi-omics biomarker discovery tool exploiting a gene-gene interaction network☆16Updated last year
- Generalizable AI predicts immunotherapy outcomes across cancers and treatments☆36Updated last week
- ☆67Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆103Updated 11 months ago
- A deep-learning framework for multi-omics integration☆26Updated 2 years ago
- Create cell sentences from sequencing data☆22Updated 11 months ago
- Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)☆19Updated last month
- Functional Embedding of Gene Signatures☆45Updated last year
- ☆80Updated 11 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- ☆52Updated 7 months ago
- CellBox: Interpretable Machine Learning for Perturbation Biology☆54Updated last year
- ☆36Updated last month
- A Deep Learning based Efficacy Prediction System for drug discovery☆67Updated 2 years ago
- CELLama Project☆18Updated this week
- MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations☆81Updated 8 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆118Updated 5 months ago
- ☆55Updated last year
- ☆28Updated last month
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆26Updated 3 weeks ago
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆71Updated last month