Alternatives and similar repositories for BINN

Users that are interested in BINN are comparing it to the libraries listed below

• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆53Updated 3 years ago
• const-ae / linear_perturbation_prediction-Paper
  ☆64Updated 4 months ago
• nitzanlab / biolord
  ☆88Updated last year
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆75Updated 9 months ago
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆49Updated 4 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 4 months ago
• BoevaLab / CancerFoundation
  CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer
  ☆29Updated 3 months ago
• DabinJeong / GOAT_multi-omics_biomarker
  Multi-omics biomarker discovery tool exploiting a gene-gene interaction network
  ☆17Updated last year
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆23Updated 4 months ago
• altoslabs / perturbench
  ☆66Updated last month
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆48Updated last year
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆58Updated 5 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆120Updated last year
• zou-group / CellVoyager
  ☆99Updated 2 months ago
• Lifoof / MoGCN
  Multi-omics integration method using AE and GCN
  ☆38Updated 2 years ago
• cantinilab / momix-notebook
  ☆66Updated 2 years ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆112Updated last month
• HakimBenkirane / CustOmics
  A deep-learning framework for multi-omics integration
  ☆31Updated 2 years ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆63Updated last year
• yulun-rayn / graphVCI
  Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)
  ☆19Updated 5 months ago
• ArcInstitute / cell-load
  pytorch dataloaders for single-cell perturbation data
  ☆37Updated this week
• Genentech / SpatialAgent
  ☆133Updated 8 months ago
• Genentech / sVAE
  ☆63Updated 2 years ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆24Updated 4 months ago
• theislab / prophet
  ☆38Updated last month
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆132Updated 10 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆168Updated 3 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆57Updated 6 months ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆108Updated last year