ghar1821 / ChronoclustLinks
A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of clusters over time.
☆17Updated 5 years ago
Alternatives and similar repositories for Chronoclust
Users that are interested in Chronoclust are comparing it to the libraries listed below
Sorting:
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆46Updated 5 years ago
- ☆17Updated 5 years ago
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19Updated 6 years ago
- This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion☆23Updated 4 years ago
- Tools for building and manipulating graphs in Python☆46Updated 2 weeks ago
- Here I explain the math behind UMAP and show how to program it from scratch in Python☆38Updated 4 years ago
- ☆17Updated 8 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- using shallow neural network layer (embedding) to infer gene-gene/sample relationship from gene expression data☆21Updated 7 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- ☆15Updated last year
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 4 years ago
- Learning disentangled representations of single-cell data for high-quality generation☆16Updated last year
- Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…☆20Updated 2 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 5 years ago
- A framework for benchmarking clustering algorithms☆44Updated 5 months ago
- Subpopulation detection in high-dimensional single-cell data☆73Updated 5 years ago
- Code used in the paper "Time Series Clustering via Community Detection in Networks"☆40Updated 5 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Updated 4 years ago
- An implementation of Consensus clustering in Python☆62Updated last year
- A Snapshot Neural Ensemble Method for Cancer Type Prediction Based on Copy Number Variations☆20Updated 3 years ago
- Multi-view hierarchical clustering in R☆12Updated last year
- Deep Learning-based Clustering Approaches for Bioinformatics☆141Updated 4 years ago
- Python, R and Matlab implementation of Brown's Method to combine dependent P-values☆25Updated 7 years ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Updated 6 years ago
- ☆10Updated 3 years ago
- R implementation of Robust Rank Aggregation algortihm☆11Updated 3 years ago
- Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…☆18Updated 5 years ago
- A probabilistic factor model for spatial transcriptomics data with subcellular resolution☆25Updated 2 years ago
- An interpretable deep learning model for cancer classification using high-dimensional omics data☆16Updated 3 years ago