☆10Oct 31, 2025Updated 4 months ago
Alternatives and similar repositories for AlphaFold-MetaInference-Tutorial
Users that are interested in AlphaFold-MetaInference-Tutorial are comparing it to the libraries listed below
Sorting:
- ☆14Jan 8, 2025Updated last year
- The gmx_rrcs script is designed to calculate the residues-residues contact scores (rrcs) from a trajectory file generated by GROMACS.☆18Jun 16, 2025Updated 8 months ago
- This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…☆21Oct 31, 2025Updated 4 months ago
- Explicit crosslinks in AlphaFold 3☆23Mar 17, 2025Updated 11 months ago
- Modelling protein conformational landscape with Alphafold☆55Aug 29, 2025Updated 6 months ago
- ☆16Sep 15, 2025Updated 5 months ago
- ☆15Jun 3, 2025Updated 8 months ago
- Contrastive learning and pre-trained encoder (CLAPE) for protein-small molecules binding (SMB) sites prediction☆19Aug 22, 2024Updated last year
- This is the official implementation of the paper "A Deep Learning Approach for Rational Ligand Generation with Property Control via React…☆20Sep 28, 2024Updated last year
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- ☆20Oct 3, 2024Updated last year
- ☆17Oct 27, 2024Updated last year
- STARLING - conSTruction of intrinsicAlly disoRdered proteins ensembles efficientLy vIa multi-dimeNsional Generative models☆38Dec 23, 2025Updated 2 months ago
- Rendering protein mutation movies from predicted 3D structures☆20Dec 7, 2023Updated 2 years ago
- Epitope Prediction Pipeline and analysis tools built around AlphaFold 2☆20May 9, 2024Updated last year
- ☆22Nov 26, 2025Updated 3 months ago
- ☆21May 24, 2024Updated last year
- ☆22Updated this week
- Deep learning tools for peptide substrate prediction and generation☆38Nov 20, 2025Updated 3 months ago
- T-ALPHA: a hierarchical transformer-based deep neural network for protein-ligand binding affinity prediction with uncertainty-aware self-…☆30Feb 24, 2025Updated last year
- Folding-Docking-Affinity framework for protein-ligand affinity prediction☆28Mar 20, 2025Updated 11 months ago
- ☆27Feb 10, 2024Updated 2 years ago
- workflow used to prepare PPB-Affinity database☆28Aug 22, 2024Updated last year
- [AAAI 2025] CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction☆33Dec 23, 2024Updated last year
- ☆58Mar 14, 2023Updated 2 years ago
- Implementation for SuperWater☆39Jan 9, 2026Updated last month
- Generative diverse protein backbones by protein language model☆34Oct 30, 2025Updated 4 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated 11 months ago
- ☆27Oct 7, 2024Updated last year
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆33Jun 9, 2024Updated last year
- [ICLR 2024 Spotlight] The official repo for the paper "De novo Protein Design using Geometric Vector Field Networks".☆30Aug 23, 2024Updated last year
- rebuilds and completes models of protein complexes using AlphaFold2☆15Updated this week
- Synthetic Accessibility via Fragment Assembly Generation☆19Feb 1, 2026Updated 3 weeks ago
- A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural info…☆11Nov 19, 2025Updated 3 months ago
- ☆40Oct 22, 2024Updated last year
- P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching☆44May 22, 2025Updated 9 months ago
- ☆62Jan 23, 2026Updated last month
- ☆40Sep 17, 2024Updated last year
- Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics☆91Jan 27, 2025Updated last year