togethercomputer / stripedhyenaLinks
Repository for StripedHyena, a state-of-the-art beyond Transformer architecture
☆409Updated last year
Alternatives and similar repositories for stripedhyena
Users that are interested in stripedhyena are comparing it to the libraries listed below
Sorting:
- Pretraining infrastructure for multi-hybrid AI model architectures☆199Updated 6 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆753Updated 9 months ago
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆223Updated 7 months ago
- Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders☆275Updated 3 months ago
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆458Updated last month
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆73Updated last week
- Inference and numerics for multi-hybrid AI model architectures☆89Updated last month
- Foundation Models for Genomics & Transcriptomics☆806Updated 2 weeks ago
- BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model | NeurIPS '25☆358Updated last month
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆128Updated last year
- Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch☆801Updated last week
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆557Updated 6 months ago
- Benchmarks for classification of genomic sequences☆171Updated 5 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆85Updated last month
- My own attempt at a long context genomics model, leveraging recent advances in long context attention modeling (Flash Attention + other h…☆55Updated 2 years ago
- A language agent gym with challenging scientific tasks☆234Updated this week
- ☆605Updated last year
- GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics☆140Updated 2 months ago
- Open source implementation of AlphaFold3☆1,030Updated last year
- Biological foundation modeling from molecular to genome scale☆1,474Updated 2 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆96Updated 6 months ago
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆100Updated 3 months ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆801Updated 2 months ago
- Official release of the ProGen models☆691Updated 2 years ago
- BioNeMo Framework: For building and adapting AI models in drug discovery at scale☆644Updated this week
- A nano protein structure prediction model based on DeepMind's AlphaFold paper☆32Updated last year
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆142Updated 4 months ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆661Updated 2 weeks ago
- (Unofficial) Implementation of dilated attention from "LongNet: Scaling Transformers to 1,000,000,000 Tokens" (https://arxiv.org/abs/2307…☆52Updated 2 years ago
- Research code accompanying AlphaGenome☆284Updated this week