Repository for StripedHyena, a state-of-the-art beyond Transformer architecture
☆441Mar 7, 2024Updated 2 years ago
Alternatives and similar repositories for stripedhyena
Users that are interested in stripedhyena are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Biological foundation modeling from molecular to genome scale☆1,585Mar 20, 2026Updated 7 months ago
- Pretraining infrastructure for multi-hybrid AI model architectures☆259Feb 20, 2026Updated 8 months ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆808Apr 22, 2025Updated last year
- ☆67Dec 8, 2023Updated 2 years ago
- Inference and numerics for multi-hybrid AI model architectures☆114Jun 16, 2026Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Genome modeling and design across all domains of life☆4,298Jun 19, 2026Updated 4 months ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆518Jan 1, 2026Updated 10 months ago
- RNA-seq prediction with deep convolutional neural networks.☆269Sep 30, 2026Updated last month
- Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch☆575Jun 26, 2026Updated 4 months ago
- 🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨☆489Oct 22, 2026Updated last week
- ☆17Feb 14, 2025Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆100Jun 10, 2026Updated 4 months ago
- ☆3,008Updated this week
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆135Oct 31, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆53Mar 22, 2026Updated 7 months ago
- Convolutions for Sequence Modeling☆922Jun 13, 2024Updated 2 years ago
- Benchmarks for classification of genomic sequences☆185Aug 14, 2025Updated last year
- Speedrunning PLM pretraining☆14Updated this week
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 7 months ago
- A benchmark suite of five genomics tasks for evaluating DNA foundation models on long-range dependencies.☆15Oct 6, 2026Updated 3 weeks ago
- An annotated implementation of the Hyena Hierarchy paper☆34May 28, 2023Updated 3 years ago
- ☆26Apr 22, 2026Updated 6 months ago
- Analyses related to the Borzoi paper.☆33Oct 1, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Foundation Models for Genomics & Transcriptomics☆928Updated this week
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated 2 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,176Feb 7, 2024Updated 2 years ago
- Understand and test language model architectures on synthetic tasks.☆291Mar 22, 2026Updated 7 months ago
- Mamba-Chat: A chat LLM based on the state-space model architecture 🐍☆942Mar 3, 2024Updated 2 years ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆645Mar 8, 2026Updated 7 months ago
- BioNeMo Recipes: For building and adapting AI models in drug discovery at scale☆878Updated this week
- AlphaGenome PyTorch port☆163Sep 15, 2026Updated last month
- ☆19Oct 21, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- FlashFFTConv: Efficient Convolutions for Long Sequences with Tensor Cores☆355Dec 28, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆75Jan 31, 2024Updated 2 years ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated 2 years ago
- Mamba SSM architecture☆18,969Jul 22, 2026Updated 3 months ago
- BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model | NeurIPS '25☆406May 28, 2026Updated 5 months ago
- Code for exploring Based models from "Simple linear attention language models balance the recall-throughput tradeoff"☆258Jun 6, 2025Updated last year
- ☆80Oct 19, 2024Updated 2 years ago