ramanathanlab / genslmView external linksLinks
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
☆140Nov 3, 2025Updated 3 months ago
Alternatives and similar repositories for genslm
Users that are interested in genslm are comparing it to the libraries listed below
Sorting:
- Train across all your devices, ezpz 🍋☆26Feb 6, 2026Updated last week
- ☆15May 22, 2025Updated 8 months ago
- Foundation Models for Genomics & Transcriptomics☆817Jan 15, 2026Updated 3 weeks ago
- PLM-interact: extending protein language models to predict protein-protein interactions.☆60Aug 29, 2025Updated 5 months ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆99Jan 24, 2023Updated 3 years ago
- This is a repository with examples to run inference endpoints on various ALCF clusters☆27Feb 3, 2026Updated last week
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆14Jun 7, 2023Updated 2 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 4 years ago
- Evolutionary velocity with protein language models☆97Dec 9, 2025Updated 2 months ago
- Deep transformer for predicting interchain residue-residue distances of protein complexes☆13Mar 19, 2024Updated last year
- Deploying synthetic coevolution and machine learning to engineer protein-protein interactions☆16Jul 30, 2023Updated 2 years ago
- ☆27Feb 24, 2024Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆110Sep 30, 2024Updated last year
- ☆49Jul 17, 2025Updated 6 months ago
- Cosmic Tagging Network for Neutrino Physics☆13Jun 26, 2024Updated last year
- Ongoing research training transformer language models at scale, including: BERT & GPT-2☆17Jan 31, 2026Updated last week
- Cross-protein transfer learning for variant effect prediction☆20Sep 13, 2023Updated 2 years ago
- Implementation code for the paper "Aggregating Residue-Level Protein Language Model Embeddings with Optimal Transport"☆22May 3, 2025Updated 9 months ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆563Nov 19, 2025Updated 2 months ago
- Protein language model trained on coding DNA☆53Oct 20, 2024Updated last year
- ☆255Jul 31, 2024Updated last year
- Collection of small examples for running on ALCF resources☆21Jan 7, 2026Updated last month
- A 3D-equivariant neural network for protein structure accuracy estimation☆20Feb 24, 2023Updated 2 years ago
- Biological foundation modeling from molecular to genome scale☆1,477Nov 19, 2025Updated 2 months ago
- 🧬 ManyFold: An efficient and flexible library for training and validating protein folding models☆81Dec 14, 2022Updated 3 years ago
- Species-aware DNA language modeling☆18Jan 25, 2023Updated 3 years ago
- Genomic Pre-trained Network☆321Feb 6, 2026Updated last week
- Argonne Leadership Computing Facility OpenCL tutorial☆10Aug 22, 2025Updated 5 months ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Sep 28, 2024Updated last year
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆129Oct 31, 2024Updated last year
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Dec 27, 2022Updated 3 years ago
- This is repository for a I/O benchmark which represents Scientific Deep Learning Workloads.☆23Dec 6, 2022Updated 3 years ago
- Adaptive Parallel PDF Parsing and Resource Scaling Engine☆62Dec 17, 2025Updated last month
- Machine Learning Agility (MLAgility) benchmark and benchmarking tools☆40Jul 31, 2025Updated 6 months ago
- Material for the SC22 Deep Learning at Scale Tutorial☆41Jul 14, 2023Updated 2 years ago
- ALCF Computational Performance Workshop☆38Oct 7, 2022Updated 3 years ago
- Adapting protein language models for structure-conditioned design☆40Aug 5, 2024Updated last year
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 2 years ago