ramanathanlab / genslmLinks
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
☆140Updated 2 months ago
Alternatives and similar repositories for genslm
Users that are interested in genslm are comparing it to the libraries listed below
Sorting:
- Repository for mRNA Paper and CodonBERT publication.☆142Updated last year
- Deep networks for protein functional inference☆183Updated 2 weeks ago
- ☆255Updated last year
- ☆134Updated 3 years ago
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆173Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆271Updated last year
- Language modeling of viral evolution☆148Updated 2 years ago
- RiboNucleic Acid (RNA) Language Model☆151Updated 3 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆128Updated last year
- Evolutionary velocity with protein language models☆95Updated last month
- Sandbox for Deep-Learning based Computational Protein Design☆120Updated last month
- ☆77Updated 3 years ago
- MSA Transformer reproduction code☆90Updated 4 years ago
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆140Updated 4 months ago
- Compressing protein structures effectively with torsion angles☆186Updated last month
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆156Updated last week
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆162Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆191Updated last year
- Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.☆168Updated last year
- bio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.☆154Updated 2 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆75Updated 2 years ago
- ☆77Updated 9 months ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆65Updated last year
- CodonTransformer (1M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression☆191Updated 5 months ago
- Bilingual Language Model for Protein Sequence and Structure☆292Updated last year
- ☆109Updated 2 years ago
- A generative latent variable model for biological sequence families.☆247Updated 3 years ago
- Neural Networks for Protein Sequence Alignment☆135Updated last year
- Inference and numerics for multi-hybrid AI model architectures☆89Updated last month
- Evolutionary couplings from protein and RNA sequence alignments☆295Updated 3 months ago