ramanathanlab / genslmLinks
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
☆132Updated 11 months ago
Alternatives and similar repositories for genslm
Users that are interested in genslm are comparing it to the libraries listed below
Sorting:
- Repository for mRNA Paper and CodonBERT publication.☆133Updated last year
- Deep networks for protein functional inference☆176Updated last month
- Language modeling of viral evolution☆144Updated 2 years ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆122Updated 9 months ago
- RiboNucleic Acid (RNA) Language Model☆117Updated 2 months ago
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆115Updated 3 weeks ago
- ☆250Updated last year
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆171Updated last year
- ☆132Updated 2 years ago
- ☆77Updated 2 years ago
- Evolutionary velocity with protein language models☆93Updated last year
- ☆69Updated 3 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆264Updated last year
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆138Updated last month
- Primary RNA sequence model☆38Updated last year
- Compressing protein structures effectively with torsion angles☆174Updated last week
- CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 speci…☆168Updated last week
- MSA Transformer reproduction code☆83Updated 3 years ago
- ☆58Updated last year
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆64Updated last year
- A generative latent variable model for biological sequence families.☆230Updated 3 years ago
- ☆107Updated last year
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆160Updated last year
- Benchmarks for classification of genomic sequences☆150Updated last week
- Multi-task and masked language model-based protein sequence embedding models.☆102Updated 4 years ago
- Bilingual Language Model for Protein Sequence and Structure☆262Updated 7 months ago
- Inference and numerics for multi-hybrid AI model architectures☆71Updated 2 weeks ago
- Evolutionary couplings from protein and RNA sequence alignments☆274Updated 5 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆177Updated last year