Guess till correct: Gungnir codec enabling high error-tolerance and low-redundancy DNA storage through substantial computing power
☆13Mar 2, 2026Updated 7 months ago
Alternatives and similar repositories for Gungnir
Users that are interested in Gungnir are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DNA Archive Simulator (DNArSim) is a memory channel model that simulate the entire DNA Data Storage process: from synthesis to basecallin…☆10Dec 6, 2021Updated 4 years ago
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 5 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Data for paper "Random Access in Large-Scale DNA Data Storage"☆12Jan 11, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SPIDER-WEB generates coding algorithms with superior error tolerance and real-time information retrieval capacity☆11Jun 21, 2024Updated 2 years ago
- RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…☆70Jan 1, 2026Updated 9 months ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Basecalling configuration prediction from FASTQ files☆34Mar 17, 2026Updated 7 months ago
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Eva, a multimodal foundation model for spatial proteomics and histopathology data.☆21Oct 16, 2026Updated last week
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 11 months ago
- A long-read somatic phasing software for tumor-only sequencing☆17Updated this week
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated 2 years ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Codec for DNA data storage able to correct substitutions, deletions, insertions and fragment loss with constraint adherence.☆20Jan 14, 2025Updated last year
- Clustering tool optimized for sparse distance matrices: ~16M elements with ~190M connections clustered in minutes.☆16Sep 12, 2026Updated last month
- An Efficient DNA Clustering algorithm based on Tree Structure.☆19Mar 28, 2023Updated 3 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆45Apr 16, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆18Oct 7, 2024Updated 2 years ago
- DNA storage for nanopore sequencing using convolutional coding and basecaller-decoder integration☆22May 28, 2023Updated 3 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆18Apr 1, 2026Updated 6 months ago
- ☆14Dec 26, 2025Updated 10 months ago
- Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph☆12Sep 11, 2025Updated last year
- A dataset of real DNA traces for benchmarking trace reconstruction algorithms☆24Nov 18, 2024Updated last year
- ClairS: a deep-learning method for long-read tumor–normal pair somatic small variant calling☆116Sep 11, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes — and raw sequencing …☆36Oct 14, 2026Updated 2 weeks ago
- Exact, SIMD-accelerated sequence alignment (Smith-Waterman, Needleman-Wunsch, semi-global, overlap)☆12Aug 10, 2026Updated 2 months ago
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆33Sep 18, 2026Updated last month
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated 2 weeks ago
- Deep DNA Storage: Scalable and Robust DNA-based Storage via Coding Theory and Deep Learning☆24May 13, 2025Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- genome sized sequences clustering☆16Dec 29, 2020Updated 5 years ago