BHam-1 / DNArSim
DNA Archive Simulator (DNArSim) is a memory channel model that simulate the entire DNA Data Storage process: from synthesis to basecalling. This simulator is part of the DnarXiv Project.
☆9Updated 3 years ago
Alternatives and similar repositories for DNArSim:
Users that are interested in DNArSim are comparing it to the libraries listed below
- DNA storage for nanopore sequencing using convolutional coding and basecaller-decoder integration☆17Updated last year
- Models, design algorithms, and other software related to Salis lab publications☆28Updated 3 months ago
- SPIDER-WEB generates coding algorithms with superior error tolerance and real-time information retrieval capacity☆9Updated 8 months ago
- Conservation analysis of homologous proteins with Python☆10Updated 3 years ago
- Files for the Genome Design/Genome Analytics Short-course organized by the SBRG☆10Updated 3 years ago
- Error correction scheme for storing information on DNA☆12Updated 7 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆53Updated 7 months ago
- ☆29Updated last year
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆117Updated 2 months ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆27Updated 2 years ago
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biology☆56Updated last week
- snakemake pipeline for creating trees from sequence sets☆73Updated last month
- BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor☆14Updated last year
- Python framework for doing ancestral sequence reconstruction☆37Updated 7 months ago
- ☆9Updated 6 months ago
- FREE Divergence Error-Correcting DNA Barcodes☆27Updated 2 weeks ago
- a pipeline to build similarity maps of protein space☆31Updated 2 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆36Updated last week
- Transmembrane proteins predicted through Language Model embeddings☆33Updated 3 weeks ago
- ☆11Updated 2 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆27Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- ☆16Updated 2 years ago
- ☆19Updated last year
- G4Hunter (2012_2015)- IECB - Bordeaux☆13Updated 4 years ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆15Updated 3 years ago
- teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, …☆40Updated last week
- A domain parser for Alphafold models☆34Updated last year
- An introductory workshop to protein language models☆12Updated 2 years ago