Alternatives and similar repositories for nanopore_dna_storage

Users that are interested in nanopore_dna_storage are comparing it to the libraries listed below

• UCLA-VAST / minimap2-acceleration
  Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository
  ☆34Updated last year
• itaiorr / Deep-DNA-based-storage
  Deep DNA Storage: Scalable and Robust DNA-based Storage via Coding Theory and Deep Learning
  ☆17Updated 5 months ago
• ntpz870817 / Chamaeleo
  BGI DNA Storage Kit
  ☆43Updated 9 months ago
• uwmisl / data-nbt17
  Data for paper "Random Access in Large-Scale DNA Data Storage"
  ☆12Updated 7 years ago
• CMU-SAFARI / SneakySnake
  SneakySnake is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU arch…
  ☆53Updated 2 years ago
• biodlab / RODAN
  A fully convolutional architecture for basecalling nanopore RNA sequencing data
  ☆11Updated last year
• shubhamchandak94 / VT_codes
  Python implementation of Varshamov-Tenengolts codes for correction of single insertion/deletion errors
  ☆12Updated 5 years ago
• shubhamchandak94 / HARC
  Fastq compression
  ☆18Updated 6 years ago
• mem3nto0 / ModiDeC-RNA-modification-classifier
  ☆12Updated 4 months ago
• nahmedraja / GASAL2
  ☆50Updated 3 years ago
• liyu95 / DeepSimulator
  The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
  ☆123Updated 5 years ago
• WGLab / DeepMod
  DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
  ☆104Updated 2 years ago
• CMU-SAFARI / RawHash
  RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genome…
  ☆58Updated 2 months ago
• hasindu2008 / slow5tools
  Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.
  ☆101Updated 2 months ago
• falconcomputing / falcon-genome
  Falcon Accelerated Genomics Pipelines
  ☆15Updated 6 years ago
• pangenome / odgi
  Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
  ☆226Updated 2 weeks ago
• EIHealth-Lab / fast-bonito
  ☆25Updated 4 years ago
• haotianteng / Xron
  Xron - an omni basecaller for ONT reads.
  ☆22Updated 11 months ago
• hasindu2008 / f5c
  Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)
  ☆158Updated 2 weeks ago
• MueFab / genie
  Open Source MPEG-G Codec
  ☆47Updated last week
• marcpaga / basecalling_architectures
  ☆16Updated 3 months ago
• sfu-compbio / mrsfast
  mrsFAST: micro-read substitution-only Fast Alignment Search Tool
  ☆28Updated 5 years ago
• igordot / sns
  Analysis pipelines for genomic sequencing data
  ☆72Updated last month
• guangzhaocs / SegPore
  SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.
  ☆12Updated 2 months ago
• jordisr / poreover
  Nanopore basecalling and consensus decoding
  ☆46Updated 3 years ago
• beebdev / HARU
  Hardware Accelerated Read Until
  ☆16Updated last month
• weir12 / DeepEdit
  DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing
  ☆17Updated 2 years ago
• nanoporetech / katuali
  Analysis pipelines from Oxford Nanopore Technologies' Research Division
  ☆50Updated 5 years ago
• Guanjinqu / Clover
  An Efficient DNA Clustering algorithm based on Tree Structure.
  ☆16Updated 2 years ago
• zichner / primerDesign
  A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
  ☆46Updated 8 years ago