Alternatives and similar repositories for scsnv

Users that are interested in scsnv are comparing it to the libraries listed below

• UPSUTER / GEMLI
  ☆31Updated 3 months ago
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆49Updated 4 years ago
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆22Updated 5 months ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆61Updated 2 years ago
• lhe17 / nebula
  ☆41Updated this week
• wenweixiong / MARVEL
  ☆49Updated 9 months ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆60Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆45Updated last year
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆28Updated 3 years ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated 11 months ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆40Updated 2 years ago
• huishenlab / compartmap
  Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq
  ☆14Updated this week
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 3 years ago
• yjzhang / split-seq-pipeline
  ☆21Updated 5 years ago
• favilaco / deconv_matching_bulk_scnRNA
  Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"
  ☆15Updated last year
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆37Updated last year
• nghiavtr / SCmut
  ☆32Updated 5 years ago
• amf71 / cloneMap
  An R package to plot maps of clone distributions in somatic evolution
  ☆17Updated last year
• semraulab / phiclust
  A clusterability measure for scRNA-seq data.
  ☆18Updated 3 years ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated 7 months ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 4 years ago
• gxiaolab / scAllele
  ☆33Updated last year
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆45Updated last year
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆29Updated 2 years ago
• cole-trapnell-lab / cicero-release
  ☆59Updated 8 months ago
• lanagarmire / SSrGE
  ☆34Updated 5 years ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆33Updated 3 years ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago