A series of perl and python scripts for generating genotypes from NGS fastq files from GTseq library sequencing.
☆21Jun 14, 2022Updated 3 years ago
Alternatives and similar repositories for GTseq-Pipeline
Users that are interested in GTseq-Pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for GTseq genotyping and quality control☆15Jan 30, 2023Updated 3 years ago
- A repository for my work on rCRUX☆12Jun 21, 2024Updated last year
- TOPMed Freeze 3 variant calling pipeline☆10Dec 5, 2018Updated 7 years ago
- efficient sampling for close-kin mark recapture power estimation☆15Jun 26, 2025Updated 10 months ago
- Obsolete!! Begin to turn to PrimerServer2☆10Jul 22, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- WinPCA. A package for windowed principal component analysis.☆50Apr 11, 2026Updated 3 weeks ago
- Mycobacterium tuberculosis next generation sequence analysis☆24Oct 11, 2019Updated 6 years ago
- ☆14Jan 22, 2026Updated 3 months ago
- ☆16Apr 3, 2023Updated 3 years ago
- NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC☆18Aug 22, 2025Updated 8 months ago
- ☆19May 27, 2022Updated 3 years ago
- AD regulome analysis☆16Apr 4, 2023Updated 3 years ago
- A client for the Ensembl REST API written in the Python programming language☆29Dec 8, 2025Updated 4 months ago
- ☆21Apr 10, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆47Sep 8, 2025Updated 7 months ago
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆17Jan 4, 2021Updated 5 years ago
- Analyse MalariaGEN data from Python☆53Apr 27, 2026Updated last week
- Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis☆24Nov 25, 2024Updated last year
- Variant Calling and Postfiltering☆11Jan 9, 2017Updated 9 years ago
- R package for analysis of hybrids and hybrid zones☆21Dec 30, 2023Updated 2 years ago
- Analysis tool for Nanopore sequencing data☆11Apr 26, 2024Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- A package for population structure inference from RAD-seq data☆35May 14, 2021Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- Detecting natural selection from population-based genetic data☆29Mar 13, 2019Updated 7 years ago
- Pattern Recognition for Cell-free DNA☆59Aug 3, 2018Updated 7 years ago
- Bremges et al. (2015). GigaScience, 4:33.☆12Dec 29, 2023Updated 2 years ago
- Reference-free duplex sequencing pipeline.☆19Oct 20, 2022Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 7 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- ☆10Nov 15, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Conversations about teaching computational skills to undergraduates☆12Sep 22, 2021Updated 4 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- Mutual nearest neighbor graphs and data visualization for genomic population networks☆17Feb 6, 2022Updated 4 years ago
- Query the gene models of a given organism/assembly☆27Apr 28, 2026Updated last week
- Foundation of integer range manipulation in Bioconductor☆23Apr 28, 2026Updated last week
- CoalHMM☆22Nov 4, 2013Updated 12 years ago
- Bioinformatics / Explore oligonucleotide composition similarity between assembly contigs or scaffolds to detect contaminant DNA.☆12Feb 27, 2019Updated 7 years ago