ginkgobioworks / ginkgoai-protein-embedding-tutorialView external linksLinks
Tutorial on how to use Ginkgo AI embedding APIs for scientific problems
☆19Nov 22, 2024Updated last year
Alternatives and similar repositories for ginkgoai-protein-embedding-tutorial
Users that are interested in ginkgoai-protein-embedding-tutorial are comparing it to the libraries listed below
Sorting:
- ☆11Updated this week
- Hackable AlphaFold 3 inference pipeline.☆34Jun 18, 2025Updated 7 months ago
- An R package for displaying binary trees, aiming to represent multiple layers of information on dendrogram leaves.☆15Sep 18, 2025Updated 4 months ago
- a pipeline for running MD simulations in the presence of probe molecules for druggability assessment☆12Dec 10, 2025Updated 2 months ago
- We provide a set of scripts to calculate native contacts from a MD. Native contacts are determined according to the overlap and rCSU appr…☆16Jul 2, 2024Updated last year
- A sorted list of ML (mostly deep learning) papers relating to chemistry, biology, and drug discovery.☆14May 12, 2017Updated 8 years ago
- Introduction to the Bioconductor project☆19Oct 17, 2025Updated 3 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Jun 26, 2023Updated 2 years ago
- VMD Audio/Text control with natural language☆19May 12, 2021Updated 4 years ago
- ☆26Aug 25, 2025Updated 5 months ago
- List of computational protein design research labs☆226Feb 9, 2025Updated last year
- ☆31Jul 8, 2025Updated 7 months ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆27Updated this week
- Codes and scripts for "An artificial intelligence accelerated virtual screening platform for drug discovery"☆66Dec 16, 2024Updated last year
- Bioconductor data science introduction☆27Feb 10, 2026Updated last week
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- This repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno appro…☆66Jan 6, 2026Updated last month
- Process and analyze surfaces using vedo in napari.☆25May 13, 2024Updated last year
- Baseline model for PPB-Affinity benchmark data☆34May 21, 2025Updated 8 months ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆76Sep 11, 2025Updated 5 months ago
- Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.☆29Dec 1, 2025Updated 2 months ago
- Metrics for our protein design competitions.☆35Nov 1, 2024Updated last year
- ☆11Oct 7, 2025Updated 4 months ago
- Consolidated repository to perform RLXF☆37Feb 5, 2026Updated last week
- XTensions built using Python 3.7 for Imaris software☆11Jan 8, 2026Updated last month
- A n body simulation of our solar system completed in python☆11Dec 6, 2021Updated 4 years ago
- Program and links to the material for the GloBIAS Training School 2025, Kobe, Japan.☆22Oct 27, 2025Updated 3 months ago
- ☆12Dec 14, 2021Updated 4 years ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆37Apr 2, 2025Updated 10 months ago
- VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5…☆33Mar 4, 2024Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Sep 12, 2024Updated last year
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11May 8, 2024Updated last year
- A lightweight dataframe & math toolkit for Rust☆26Aug 25, 2025Updated 5 months ago
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆10Jan 25, 2026Updated 3 weeks ago
- ☆23Dec 5, 2025Updated 2 months ago
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11Jan 22, 2026Updated 3 weeks ago
- Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides …☆12Feb 25, 2025Updated 11 months ago
- An ambient noise detector☆10Aug 23, 2020Updated 5 years ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆41May 29, 2024Updated last year