☆32Oct 27, 2025Updated 4 months ago
Alternatives and similar repositories for ProSmith
Users that are interested in ProSmith are comparing it to the libraries listed below
Sorting:
- ☆78Sep 12, 2024Updated last year
- ☆15Apr 3, 2025Updated 11 months ago
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated 2 weeks ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 4 months ago
- Use AutoDock for Ligand-based Virtual Screening☆22Aug 18, 2024Updated last year
- Modelling protein conformational landscape with Alphafold☆56Aug 29, 2025Updated 6 months ago
- Reaction-Conditioned Virtual Screening of Enzymes☆42Jun 11, 2025Updated 9 months ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆48Nov 4, 2025Updated 4 months ago
- ☆13Oct 19, 2023Updated 2 years ago
- The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri …☆17Nov 27, 2025Updated 3 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆88Jun 23, 2024Updated last year
- AlphaFold-initiated replica exchange protein docking☆91Jun 5, 2025Updated 9 months ago
- Fast and versatile biomolecular structure PDB file parser using SQL queries☆24Mar 17, 2023Updated 3 years ago
- ☆49Nov 19, 2025Updated 4 months ago
- ☆71Nov 25, 2025Updated 3 months ago
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆49Nov 4, 2025Updated 4 months ago
- Genomic language model predicts protein co-regulation and function☆86Mar 19, 2025Updated last year
- ☆15Sep 9, 2024Updated last year
- ☆31Dec 12, 2024Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆81Oct 24, 2025Updated 4 months ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Jun 26, 2023Updated 2 years ago
- ☆27Feb 10, 2024Updated 2 years ago
- Python package to atom map, correct and suggest enzymatic reactions☆43Apr 11, 2024Updated last year
- ☆56Feb 16, 2026Updated last month
- Python package for building and analyzing models using ModelSEED☆26Feb 11, 2026Updated last month
- ☆13Feb 27, 2024Updated 2 years ago
- ☆95Dec 30, 2025Updated 2 months ago
- ☆92Sep 25, 2024Updated last year
- A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural info…☆11Nov 19, 2025Updated 4 months ago
- ☆22Jul 8, 2025Updated 8 months ago
- ☆41Jun 12, 2025Updated 9 months ago
- ☆13May 19, 2024Updated last year
- ☆11May 3, 2025Updated 10 months ago
- Geometric deep learning of protein–DNA binding specificity☆76Mar 19, 2025Updated last year
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆74Feb 24, 2025Updated last year
- Molecular Dynamics for Experimentalists☆65Nov 18, 2025Updated 4 months ago
- ☆19Mar 16, 2025Updated last year