Alternatives and similar repositories for ProSmith

Users that are interested in ProSmith are comparing it to the libraries listed below

• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆31Updated last year
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆63Updated 3 weeks ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆42Updated 2 years ago
• bene837 / af2seq
  ☆44Updated 10 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆51Updated last week
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆41Updated this week
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆63Updated 8 months ago
• dina-lab3D / CombFold
  ☆85Updated 10 months ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆68Updated 11 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆70Updated 4 months ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆33Updated 7 years ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆55Updated 9 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆44Updated 8 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆40Updated 2 months ago
• ChakradharG / PeptideBERT
  Transformer Based Language Model for Peptide Property Prediction
  ☆46Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated last month
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆44Updated 3 months ago
• Kuhlman-Lab / evopro
  ☆86Updated 2 weeks ago
• AlexanderKroll / ESP
  ☆73Updated 10 months ago
• biomed-AI / GraphEC
  ☆41Updated 11 months ago
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆31Updated last month
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆60Updated last year
• rochoa85 / PepFun2
  PepFun 2.0: improved protocols for the analysis of natural and modified peptides
  ☆25Updated 2 years ago
• hefeda / PGP
  ☆41Updated 2 months ago
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆68Updated 4 months ago
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆83Updated 2 months ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆48Updated 3 years ago
• jkwang93 / AMP-Designer
  A foundation model approach to guide antimicrobial peptide design in the era of artificial intelligence driven scientific discovery
  ☆37Updated 3 weeks ago
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆17Updated last year
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year