leipzig / SandwichesWithSnakemake
This is a beginner's tutorial to Snakemake
☆70Updated 8 years ago
Alternatives and similar repositories for SandwichesWithSnakemake:
Users that are interested in SandwichesWithSnakemake are comparing it to the libraries listed below
- A cookiecutter template for Snakemake workflows☆57Updated 3 years ago
- ☆43Updated 8 years ago
- DEPRECATED: please see individual lesson repositories for current material.☆96Updated 8 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 7 years ago
- Documentation of the Snakemake-Profiles project.☆52Updated 3 years ago
- chitin: an awful shell for awful bioinformaticians☆61Updated 4 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Introduction to the Command Line for Genomics☆65Updated last week
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Updated 6 years ago
- A collection of well-known bioinformatics programs.☆25Updated 9 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆26Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- A simple Snakemake profile for Slurm without --cluster-config☆151Updated 8 months ago
- Flexible omics pipeline☆18Updated 8 months ago
- Plot categorical heatmaps with seaborn☆18Updated 2 years ago
- GO enrichment with python -- pandas meets networkx☆87Updated 4 years ago
- Monitor computational workflows in real time☆71Updated 9 months ago
- DEPRECATED. Please visit our new repository (cytoscape/cyREST)☆27Updated 7 years ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Updated 11 years ago
- Library of snakemake rules.☆12Updated 6 years ago
- Documentation of the Snakemake-Workflows project☆153Updated 3 years ago
- Efficient handling of FASTQ files from Python☆51Updated 6 months ago
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 2 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- Materials for Analyzing Next-Generation Sequencing (ANGUS) course.☆106Updated 2 years ago
- Response to blog post about Salmon☆37Updated 7 years ago
- Position-wise analysis of sequencing and genomics data☆39Updated last year