leipzig / SandwichesWithSnakemake
This is a beginner's tutorial to Snakemake
☆70Updated 8 years ago
Alternatives and similar repositories for SandwichesWithSnakemake:
Users that are interested in SandwichesWithSnakemake are comparing it to the libraries listed below
- A cookiecutter template for Snakemake workflows☆57Updated 3 years ago
- ☆43Updated 8 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Documentation of the Snakemake-Profiles project.☆52Updated 2 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Efficient handling of FASTQ files from Python☆51Updated 5 months ago
- A short tutorial on getting started with Snakemake for workflow management☆50Updated 5 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Request for comments on interchangeable bioinformatics containers☆40Updated 5 years ago
- Data Wrangling and Processing for Genomics☆72Updated this week
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- Response to blog post about Salmon☆37Updated 7 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆83Updated this week
- Monitor computational workflows in real time☆70Updated 8 months ago
- RNA-Seq Snakemake example with Jekyll homepage creation☆20Updated 10 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago
- DEPRECATED. Please visit our new repository (cytoscape/cyREST)☆28Updated 7 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Library of snakemake rules.☆12Updated 6 years ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆86Updated 2 years ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 3 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 5 years ago
- Log command line events to a graph database :)☆13Updated 8 years ago
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Updated 6 years ago
- A Github action for running a Snakemake workflow☆56Updated 3 weeks ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆69Updated 3 years ago
- Flexible omics pipeline☆18Updated 6 months ago
- Materials for GCB535 at Penn.☆20Updated 5 years ago